Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00349 ATGGCGGAGGGTTTTGAACTCTACCATGTCCCACAGCAAAGCAGGCGAGACAAGCTGAGAGTAGGAGTTGGGAGTGGCGCTACTAATAATCCCAATTTCCTTCCTTTATATCATCATGGTGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGATGATCCCTCTTCTTTAATTTCCCCCGATTTTGATTTTCATCAAAACCCCTCTTTTAATCTTCATAATCATAATCATTACCCTCCCACTCCCACTCCCCCGGCTACTTTCGCCACCGCCGCCCACCATCTCCCCCTGCTCCTCCCCGACCAACAACCACCCTTGTCCCTTGACCTCAACCTCCAACACCGCTACGCCTCTTCCCCCGCCCCTCTTCTTACCTCCAAATTCTTGAAGCCAGCTCAGCAGCTACTCCACGACCTATTCCACTACGCCGACAAGTTCCCGCCTGATTCCCCCCTTGTTGACCCTCTTCTTCACAGCTTGGGCGCTGATATTCCCACCGCCGCTCTTCATCATCACCCCACCGACGATGGAATTGAAAGCCGGAGGAGAAAATCTAGGCTTATTACCATGCTCGACGAGGTTTATAGAAGATATAAGCTATACTATCAGCAGATGCAGGCAGTGGTGACAACATTCGAGTACGTTGGTGGGCTTGGCAATGCAGCTCCCTACGTGAACTTAGCCGTGAAAGCTATGTTTAAGCACTTCAGATTCTTAAAGAATGCCATTGCCGACCAGCTCCAATTGAACAAGCAGCATCAGCAGCCGCCGCCGCCACCGCCGCCTTATAACCCGTATTGTCAAAGATCTATTCACAACAACAGTGGGGGATTCGTGGATCACCAACCCGTTTGGCGCCCGCAGAGAGGCCTCCCCGAGAGTGCTGTCACCGTCCTACGAGCTTGGCTGTTTGAACATTTCCTCCATCCTTATCCTACGGATACCGACAAGCTCATGCTGGCTAACCAGACTGAAACAAGGGAAGCTCAGAAATCTCAGCACAGGGACGCCAATAATGGAACTCCCTTAAACAACAACAACAACAACGACCATCTTTCATCCACAAACCAATCATTGAATAACGCATCTTCTTCAAACCATGACCAACACCCACTCCACTTATCCAACTCCAATTTCTTTCCGACCCACCACCCTCACCCGCCTGCCGGAGCCACCACGATGGCCGCCGGCAACGTTTCCTTAACTCTGGGGCTCCACCAGAATCACGCCGGGATCACTCTCACAGAGCCGTTTCCGATCAATGCAGCTCAGCATTTTAACCTTGGGTTAGAAGCCAACGGTGAAGGGTTTGTAAATGAGTGGTTTTGA 1326 51.43 MAEGFELYHVPQQSRRDKLRVGVGSGATNNPNFLPLYHHGGGGGGGGGGGDDPSSLISPDFDFHQNPSFNLHNHNHYPPTPTPPATFATAAHHLPLLLPDQQPPLSLDLNLQHRYASSPAPLLTSKFLKPAQQLLHDLFHYADKFPPDSPLVDPLLHSLGADIPTAALHHHPTDDGIESRRRKSRLITMLDEVYRRYKLYYQQMQAVVTTFEYVGGLGNAAPYVNLAVKAMFKHFRFLKNAIADQLQLNKQHQQPPPPPPPYNPYCQRSIHNNSGGFVDHQPVWRPQRGLPESAVTVLRAWLFEHFLHPYPTDTDKLMLANQTETREAQKSQHRDANNGTPLNNNNNNDHLSSTNQSLNNASSSNHDQHPLHLSNSNFFPTHHPHPPAGATTMAAGNVSLTLGLHQNHAGITLTEPFPINAAQHFNLGLEANGEGFVNEWF 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4418841 4422430 + Carg19956-RA Car03g00349 144401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00349 441 Pfam Homeobox KN domain 301 329 IPR008422 GO:0003677|GO:0006355
Car03g00349 441 MobiDBLite consensus disorder prediction 323 393 - -
Car03g00349 441 MobiDBLite consensus disorder prediction 35 55 - -
Car03g00349 441 MobiDBLite consensus disorder prediction 334 381 - -
Car03g00349 441 MobiDBLite consensus disorder prediction 249 271 - -
Car03g00349 441 Pfam Associated with HOX 122 243 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g00349 Car06g00239 CCT
Car03g00349 Car14g00087 CCT
Car03g00349 Car06g00239 ECH
Car03g00349 Car14g00087 ECH
Car03g00349 Car07g01000 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00349 Car-Chr3:4418841 Car01g00458 Car-Chr1:2663523 1.39E-44 dispersed
Car14g00087 Car-Chr14:459051 Car03g00349 Car-Chr3:4418841 1.49E-84 wgd
Car03g00349 Car-Chr3:4418841 Car06g00239 Car-Chr6:1364836 1.39E-68 wgd
Car03g00349 Car-Chr3:4418841 Car07g01000 Car-Chr7:5698858 3.78E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00349 - - cmos:111453568 712.605