Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00371 ATGGCTTCTCTTTCCCTCCTCTGCTGCATTTCCATTGCTTCTTTCTCCTCCCTCTTCCTCCTCTCTCACGCTAGAATTCCCGGCGTCTACTCCGCCGGTGCCTGGCAGGACGCCCACGCCACATTCTACGGCGGCAGTGATGCTTCCGGAACCATGGGTGGTTCTTGTGGGTATGGGAATCTCTACAGCCAGGGGTATGGTGTTAACACTGCGGCTTTGAGTACTGCACTCTACAACAATGGCCTTAGCTGTGGTGCTTGCTTTGAGATCAAGTGCGCTAATGACCCCCAATGGTGCCATCCCGGTAGCCCTTCTATATTCATTACGGCTACCAATTTTTGTCCCCCCAATTACGCTCTTCCTAGTGACAATGGCGGCTGGTGTAACCCTCCTCGCACCCATTTCGATCTCGCTATGCCTATGTTCCTGAAAATCGCCGAGTACCGCGCCGGAATCGTTCCCGTCTCTTACCGCCGGGTGCCATGTAGGAAACAAGGGGGAATCAGGTTCACAATAAACGGTTTCCGTTACTTCAACTTGGTATTGATCACGAACGTCGCGGGTGCAGGGAATATCGTGAGGGTTAGCGTGAAAGGATCAAACACGGGTTGGATGAGTATGAGTCATAACTGGGGGCAAAATTGGCAATCCAACGTCGTTTTAGTGGGCCAGGCTCTGTCCTTCCGCGTCACCGGCAGTGACCGTCGTACCTCAACTTCATTGAACGTGGTGCCTTCTAATTGGCAGTTCGGTCAGACGTTCACGGGAAAGAATTTCCGCGTTTGA 786 52.8 MASLSLLCCISIASFSSLFLLSHARIPGVYSAGAWQDAHATFYGGSDASGTMGGSCGYGNLYSQGYGVNTAALSTALYNNGLSCGACFEIKCANDPQWCHPGSPSIFITATNFCPPNYALPSDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGNIVRVSVKGSNTGWMSMSHNWGQNWQSNVVLVGQALSFRVTGSDRRTSTSLNVVPSNWQFGQTFTGKNFRV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4536607 4537814 + Carg13811-RA Car03g00371 144423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00371 261 Gene3D - 22 163 IPR036908 -
Car03g00371 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Car03g00371 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Car03g00371 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Car03g00371 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Car03g00371 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Car03g00371 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Car03g00371 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 167 IPR007112 -
Car03g00371 261 PANTHER EXPANSIN-A15 7 260 IPR002963 GO:0009664
Car03g00371 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Car03g00371 261 PANTHER EXPANSIN 7 260 - -
Car03g00371 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Car03g00371 261 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Car03g00371 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Car03g00371 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Car03g00371 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Car03g00371 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Car03g00371 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Car03g00371 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Car03g00371 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Car03g00371 261 SUPERFAMILY Barwin-like endoglucanases 34 185 IPR036908 -
Car03g00371 261 Gene3D - 167 259 IPR036749 -
Car03g00371 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 256 IPR007117 -
Car03g00371 261 SUPERFAMILY PHL pollen allergen 164 256 IPR036749 -
Car03g00371 261 SMART dpbb_1 70 157 IPR007112 -
Car03g00371 261 Pfam Lytic transglycolase 70 157 IPR009009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g00371 Car07g00978 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00371 Car-Chr3:4536607 Car13g00092 Car-Chr13:680431 1.98E-163 dispersed
Car14g00994 Car-Chr14:7558331 Car03g00371 Car-Chr3:4536607 3.50E-96 dispersed
Car01g00552 Car-Chr1:3258039 Car03g00371 Car-Chr3:4536607 2.18E-165 wgd
Car02g00576 Car-Chr2:4394601 Car03g00371 Car-Chr3:4536607 1.79E-169 wgd
Car20g00342 Car-Chr20:1954549 Car03g00371 Car-Chr3:4536607 2.08E-169 wgd
Car03g00371 Car-Chr3:4536607 Car04g00193 Car-Chr4:1056885 3.88E-167 wgd
Car03g00371 Car-Chr3:4536607 Car04g01084 Car-Chr4:6245571 6.13E-142 wgd
Car03g00371 Car-Chr3:4536607 Car04g02553 Car-Chr4:20180730 1.21E-134 wgd
Car03g00371 Car-Chr3:4536607 Car07g00978 Car-Chr7:5558020 1.22E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00371 - - csv:101212872 495.352