Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g00379 | ATGGTGTTTCCCTCTCACCCATCTAATTATCTTGATCCAACAACCCATCAATGGCAACATCAAACCCCAACCCATCAATCTGGGACCAGTTTTCAGCTCGTGTCGCCGCCACGGGCGCCGCCACAAGTCCGCCCCGGCTCGATGGTGGATCGTGCCCGAATGGCGAACCTGCCGGTGCCGGAGACAGCCCTGAAATGCCCAAGATGTGAATCAACTAACACAAAGTTTTGTTATTTCAACAACTATAGCCTCTCTCAGCCACGCCACTTTTGCAAGACCTGCCGTCGTTACTGGACCAGAGGTGGCGCCCTTAGAAGTGTCCCGGTTGGCGGCGGCTACCGCCGGAATAATAAAAGAACCAAAAGTACCTCTAAATCTCCGGTTAACTCCCAATGCCAACCGACGACTACCACCGAGATTTCAGGAGGAGAAACAATGAGATTAAATTACATACAAAATGAAGGAGGTATGGATTCAACTCATCCCCCCATTGGGATAACAAGCTTCTTAGGGTTTGATCAAATTCAATGGCGGCCACAGCTTCAGCTACACCGAACGCAGCCAGCTCGGTTGCTCGGAAACGGTGGTGGTGGTGGCGGCGACGCATCGTCGAGCTATAGCATTGTCGGGAAGATGGAAGCGACGAAAATGGAGGACGATGGAGAACACCATGTGAATGTGGGAAAGCCATTTTGGGATCGCCATTATTGGAATGCTTTTAATCCTTCATCTTCTTCTTCCCATTTATGA | 750 | 50.53 | MVFPSHPSNYLDPTTHQWQHQTPTHQSGTSFQLVSPPRAPPQVRPGSMVDRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSTSKSPVNSQCQPTTTTEISGGETMRLNYIQNEGGMDSTHPPIGITSFLGFDQIQWRPQLQLHRTQPARLLGNGGGGGGDASSSYSIVGKMEATKMEDDGEHHVNVGKPFWDRHYWNAFNPSSSSSHL | 249 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4584565 | 4585791 | - | Carg13803-RA | Car03g00379 | 144431 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g00379 | 249 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Car03g00379 | 249 | Pfam | Dof domain, zinc finger | 63 | 118 | IPR003851 | GO:0003677|GO:0006355 | |
| Car03g00379 | 249 | ProSitePatterns | Zinc finger Dof-type signature. | 66 | 102 | IPR003851 | GO:0003677|GO:0006355 | |
| Car03g00379 | 249 | MobiDBLite | consensus disorder prediction | 8 | 36 | - | - | |
| Car03g00379 | 249 | MobiDBLite | consensus disorder prediction | 122 | 140 | - | - | |
| Car03g00379 | 249 | MobiDBLite | consensus disorder prediction | 109 | 140 | - | - | |
| Car03g00379 | 249 | ProSiteProfiles | Zinc finger Dof-type profile. | 64 | 118 | IPR003851 | GO:0003677|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car03g00379 | Car14g00128 | CCT | |
| Car03g00379 | Car06g00263 | CCT | |
| Car03g00379 | Car14g00128 | ECH | |
| Car03g00379 | Car06g00263 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g00379 | Car-Chr3:4584565 | Car13g00103 | Car-Chr13:742863 | 1.24E-45 | dispersed | |
| Car01g00540 | Car-Chr1:3203824 | Car03g00379 | Car-Chr3:4584565 | 6.27E-47 | wgd | |
| Car14g00128 | Car-Chr14:617199 | Car03g00379 | Car-Chr3:4584565 | 6.66E-53 | wgd | |
| Car02g00587 | Car-Chr2:4460372 | Car03g00379 | Car-Chr3:4584565 | 2.87E-45 | wgd | |
| Car20g00359 | Car-Chr20:2020738 | Car03g00379 | Car-Chr3:4584565 | 8.66E-44 | wgd | |
| Car03g00379 | Car-Chr3:4584565 | Car04g00201 | Car-Chr4:1109912 | 4.99E-41 | wgd | |
| Car03g00379 | Car-Chr3:4584565 | Car04g01092 | Car-Chr4:6300012 | 4.71E-42 | wgd | |
| Car03g00379 | Car-Chr3:4584565 | Car04g02541 | Car-Chr4:20112631 | 6.26E-41 | wgd | |
| Car03g00379 | Car-Chr3:4584565 | Car06g00263 | Car-Chr6:1493595 | 1.46E-44 | wgd | |
| Car03g00379 | Car-Chr3:4584565 | Car07g00965 | Car-Chr7:5466298 | 1.63E-74 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3110 | PF02701 | zf-Dof | 3.20E-31 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g00379 | - | - | cmos:111453164 | 506.523 |