Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00465 ATGGCTTTTCATTCAGAGAGGGATAGAAGTGAAGAGCTTCCTTTGCGAAATCGAGTTGATCAACAACTGGTTTACTCATTGAGACAACAGTTGGATGCATCAAATCAAGACAGTGATGGAGATATGCCTTTCTTCAGTTTTAGTTCTCTAAAGACTGCTACAGATGACTTCTCAGATGCTAATAAACTTGGAGAAGGCGGGTTTGGTCCAGTTTACAAGACGCGTTTTAAAAACCTTGAGGGGAAACCTAAAAGGGAAAACCCAAAGAGGACAATATCTGTTAGTAGCGGACTTTGGTTGTTACAAATGGTATTAGAGCCAGACACTGGGCAGTGTGCCAACGAAGATGTTGGGCCTCTGAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAAAGAAACAAAGCATTCCTTATAAGGTTGTGGAAACTTCTCCCTCGCCGACGCATTTTAAAAACCTTGAGGAGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCAGTGAGCTTGGGTTGTTACAAATAGTATTAGAGCCAGACACCAGACAGTGTGCCAACAAGGACGTTGGGCCCTCAAGGGGGTGGATTGTGAGATCCCACACCGGTTGGAGAAAGAAACAAAGCATTTCTTATAAGGGAAAGCTGATGGATGGTGAGGAAGTAGCTGTGAAAAGACTATCAACAAAATCAAATCAAGGATATGAAGAGTTCAAGAATGAAGCAAAGGTCATCTGGAAGCTTCAACATAAGAATCTGGTTAGACTCCTGGGATATTGTGCTGAAGGAGAAGAAAAACTTCTAATCTATGAGTACATGGCAAATACAAGTCTTGATGCTTTCTTGTTTGATCCATTGAAGTGCAAACAACTCGACTGGCTCAAGCGCGAAAACATTCTCAATGGGATTGCAAGAGGAATTCTGTATCTCCATGAAGATTCTCGACTCAAAATCATCCACAGGGATTTGAAAGTGAGTAATGTACTGTTAGATGAGGAGATGAATCCAAAAATATCAGATTTTGGAACTGCTAGGATATTTGGAGGCAAGCAAATTGATGCCAGCACCAATAGAATAGTTGGAACATATGGGTATATGGCGCCAGAGTATGCTATGGAGGGAGTTTTCTCAGTTAAATCCGATGTATACAGTTTTGGAGTTCTAATCCTGGAGGTGATCAGTGGGAGAAAGAGCATTGGTTTTCTAAACATGGACAGAGCGCAGAACCTTCTGTCATATGCATGGGAGCTATGGAATGAAGGTAGAGCAGAAGAAATGATAGATGAGAACCTGGCTGGAGATTATCGTGAGAGTGAGGCCGTAAAATGGATCCAGATTGGCTTGCTGTGCGTGCAAGAAGATGCTAACACCAGACCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCCAGTCGGTTCACCTTCCTCAGCCCTCAAAACCTCCATTTCTTACAGGTCGAGGGTCTATCAGTAGATATCAATATTCATCAACTGAAACAGGGACAGGGCTACTCACCACAGATCAGTCGTCTACTACTGCTTCTATCTAG 1557 43.29 MAFHSERDRSEELPLRNRVDQQLVYSLRQQLDASNQDSDGDMPFFSFSSLKTATDDFSDANKLGEGGFGPVYKTRFKNLEGKPKRENPKRTISVSSGLWLLQMVLEPDTGQCANEDVGPLRGWIVRSHIGWRKKQSIPYKVVETSPSPTHFKNLEEKPERESPKRTISASSELGLLQIVLEPDTRQCANKDVGPSRGWIVRSHTGWRKKQSISYKGKLMDGEEVAVKRLSTKSNQGYEEFKNEAKVIWKLQHKNLVRLLGYCAEGEEKLLIYEYMANTSLDAFLFDPLKCKQLDWLKRENILNGIARGILYLHEDSRLKIIHRDLKVSNVLLDEEMNPKISDFGTARIFGGKQIDASTNRIVGTYGYMAPEYAMEGVFSVKSDVYSFGVLILEVISGRKSIGFLNMDRAQNLLSYAWELWNEGRAEEMIDENLAGDYRESEAVKWIQIGLLCVQEDANTRPTMSMVVLMLGSQSVHLPQPSKPPFLTGRGSISRYQYSSTETGTGLLTTDQSSTTASI 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4996480 4998799 + Carg13718-RA Car03g00465 144517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00465 518 Pfam Protein tyrosine and serine/threonine kinase 220 468 IPR001245 GO:0004672|GO:0006468
Car03g00465 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Car03g00465 518 ProSiteProfiles Protein kinase domain profile. 57 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00465 518 MobiDBLite consensus disorder prediction 150 166 - -
Car03g00465 518 MobiDBLite consensus disorder prediction 147 166 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00465 Car-Chr3:4996480 Car16g00582 Car-Chr16:3649898 9.35E-06 dispersed
Car04g00377 Car-Chr4:2133446 Car03g00465 Car-Chr3:4996480 9.44E-10 dispersed
Car03g00465 Car-Chr3:4996480 Car03g00466 Car-Chr3:4999507 1.31E-14 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88716 PF07714 PK_Tyr_Ser-Thr 6.10E-42 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00465 - - cpep:111803726 598.201