Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00472 ATGTTCGATCAAGATATGTTCCATGCACTACACCCTCACCATCATATGTTTGACATGGCGTTTAACACCTCCGAAAACGAGTTGGAAGATGTGAGAGATGATGATTTTGAGTCCAAATCAGGACCTGAAATCACCTTTGAGCCGCCTTGTGAGAGTGAGCATCAACAACGCGCCAAGAAGAGACGTTATAATCGCCATACACACCACCAAATCCAAGAAATGGAAGCATTCTTTAAGGAATGTCCGCACCCAGATGACAAGCAAAGAATGGACCTTAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTCAAGTTTTGGTTTCAGAACAAACGCACCCAAATGAAGAAGGCTCAACAGGAAAGACATGAAAACGCCATTTTGAAAGCCGAGAATGAAAAGCTTCGAGCTGAGAATACTCGTTACAGAGAAGCATTCGCCCACTCCACCTGCTGCCCCAACTGTGGTTCCTCCGCCACTGCCCTCGGCGAGATGTCCTTCGACGACCAACATTTGCGCATTGAAAATTCTCGTTTGCGAGATGAGATGGAGCGAATGAGTGGATATGGCCTGAAATCCACCAAGTCTGTCCCTTCTTCGTACTATCACCTGCCGTCCAATGCTCCACAGTCGTCGGGTTTCGTGGGGGAAATGTATGGAGCGTGCGACTTTCTCCGCTCCATTTCCAGACCTTCAGAAGCCGACAAGCCAATCATTGTAGAACTGGCGGTTTCCGGCATGGAGGAATTGAGCCGAATGGCTCAGGCCGGAGAACCGTTGTGGGTTCCGGCTGATACCAAGTCAAGTGAAGTGGTTCTTAACGAAGCAGAGTATTTGAGCTGTTTTGGGGGCAGAGTTGGGCCCAAACCCTTGGGCTTTAGAACCGAAGCTTCTCGAGTTTCGGCTATTGTGTTCATGAACCATATTAAGCTCGTGGATATTTTAATGGACGCTACGCAATGGTCCACTGTGTTCTGCGGCATTGTTTCCCGGGCGTCCACCGTTGAAGTTCTTTCGCCTGGCCTACCCGGAAACTTCAACGGCGCCTTGTACCTGATGAGTGCTGAATTCCAAGTTCCATCGCCACTTGTTCCAACACGTGAAAACTACTTTGTAAGATACTGCAAACAGCAGGGGGATGGGGTATGGGCGGTGGCTGATGTTTCCTTGGACACCCTGCGGCCCTGTTCCATGCCAAGGACCCGAAGGAGACCTTCTGGTTGTTTGATTCAACAATTGCCCAATGGCTATTCAAAGATCACTTGGGTGGAACATGTTGAGGCGGACGAAACTGGTGTCCCGACAATGTACAGACCGCTCTTTAATTCAGGCCTCGCTTTTGGGGCTAAACGATGGGTTGCTACTTTAGATAGGCAATCTGAACGTTTTGCCACATCAATCGCCACCTCCATATCCACCGGCGATCTACGCGTCATATCGAGTATTGAAGGGAGGAAGAGTATGCTGAAGCTAGCCGAGAGAATGGTGACGAGCTTTTGCGCTGGCGTTGGCGCGTCGAGTGTACACGCGTGGACGGCGTTACCAATCGCCGCTGGTGATGATGTTCGAGTTGTAACGAGGAAGAGCACCGACGAACCAGGGCGACCACCTGGTGTTGTGCTGAGCGCCGCCACTTCTTTTTGGATCCCTGTTCCACCTAAGGTTGTGTTTGATTTCCTTCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGGGGGTTAGTCCAGGAAATGGCGCACATAGCCAACGGCCGCCACTCCGGGAATTGTGTTTCCTTGCTCCGTGTCAATAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTGTACAGGATCCTACGTTATTTATGCTCCGGTGGACATAGTTGCAATGAACGTGGTGCTAAGCGGTTGCGATCCGGATTACGTGGCACTTCTACCGTCAGGATTCGCCATACTCCCTGACGGACCCGCCGGGGCCAACGGTGGGGAAATTCTGGAGCTGGGCTCCGGTGGGTCACTCATCACGGTGGCATTTCAAATCCTGGTTGATTCAGTTCCAACGGCTAGACTGTCAATTGGATCAGTGGCCACTGTGAACAGCTTGATTAAGTGCACGGTTGAGAGGATCAGAGCCGCTGTGATGCGGGAAAATCCCTAA 2166 50.92 MFDQDMFHALHPHHHMFDMAFNTSENELEDVRDDDFESKSGPEITFEPPCESEHQQRAKKRRYNRHTHHQIQEMEAFFKECPHPDDKQRMDLSRELGLEPLQVKFWFQNKRTQMKKAQQERHENAILKAENEKLRAENTRYREAFAHSTCCPNCGSSATALGEMSFDDQHLRIENSRLRDEMERMSGYGLKSTKSVPSSYYHLPSNAPQSSGFVGEMYGACDFLRSISRPSEADKPIIVELAVSGMEELSRMAQAGEPLWVPADTKSSEVVLNEAEYLSCFGGRVGPKPLGFRTEASRVSAIVFMNHIKLVDILMDATQWSTVFCGIVSRASTVEVLSPGLPGNFNGALYLMSAEFQVPSPLVPTRENYFVRYCKQQGDGVWAVADVSLDTLRPCSMPRTRRRPSGCLIQQLPNGYSKITWVEHVEADETGVPTMYRPLFNSGLAFGAKRWVATLDRQSERFATSIATSISTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPIAAGDDVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDCTGSYVIYAPVDIVAMNVVLSGCDPDYVALLPSGFAILPDGPAGANGGEILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5043138 5046883 + Carg13710-RA Car03g00472 144524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00472 721 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Car03g00472 721 Coils Coil 117 144 - -
Car03g00472 721 Pfam START domain 242 461 IPR002913 GO:0008289
Car03g00472 721 ProSiteProfiles START domain profile. 231 464 IPR002913 GO:0008289
Car03g00472 721 Pfam Homeodomain 60 116 IPR001356 GO:0003677
Car03g00472 721 MobiDBLite consensus disorder prediction 28 63 - -
Car03g00472 721 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01473 Car-Chr2:9600386 Car03g00472 Car-Chr3:5043138 3.31E-28 dispersed
Car03g00472 Car-Chr3:5043138 Car17g00018 Car-Chr17:71992 0 dispersed
Car19g00093 Car-Chr19:764983 Car03g00472 Car-Chr3:5043138 4.18E-16 dispersed
Car11g01520 Car-Chr11:12241544 Car03g00472 Car-Chr3:5043138 0 wgd
Car13g00584 Car-Chr13:7664985 Car03g00472 Car-Chr3:5043138 0 wgd
Car16g00556 Car-Chr16:3518734 Car03g00472 Car-Chr3:5043138 2.44E-86 wgd
Car19g00719 Car-Chr19:8221874 Car03g00472 Car-Chr3:5043138 0 wgd
Car02g00137 Car-Chr2:798512 Car03g00472 Car-Chr3:5043138 0 wgd
Car20g00526 Car-Chr20:2899070 Car03g00472 Car-Chr3:5043138 0 wgd
Car03g00472 Car-Chr3:5043138 Car07g00253 Car-Chr7:1378530 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3120 PF01852 START 7.30E-48 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00472 K09338 - csv:101209093 1209.13