Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00496 ATGCGGACCTCTGTCGTCTCAATGGAGTGGACGAGAGGTCCGACCATAGGCCGTGGCTCCTCTGCTGCGGTCTCCGTAGCCACCGATCTTTGCTCTGGTCAAGTTCTGGCGGTTAAGTCTGTTGAGTTCACTCGCTCGGATTGTCTCAAGAGGGAACAGAGGATTCTTTCTCGATTCAATTGTCCACGTGTTATAGCTTATAAGGGGTTTGATGTTACGTTGGAAAATGGGGAATTGATGTGTAATCTTTTGATGGAGTTTGCGCCTGGTGGGTCGATTTTGGATGTGATGGAGGCGGCTGGTGGCCGATTAGATGAGGCGACGGCCCAATTTTATACTCGAGAAATTTTAAGTGGGCTCGAGTATGTTCATTCCAATGGTGTGGTGCATTGCGACATTAAGTGTTGCAATATTTTGGTTGGTGAAGATGGGATTAAGATAGCGGATTTTGGTTGCGCGCGGCAAGTAGAGGACGTTTCCTGTAGAAATTTGGCCGGAACGCTGATATTTATGGCGCCGGAGGTGGCGCGTGGAGAAAAACAGGGGTTTGCAGCTGATGTTTGGGCAGTGGGTTGCGCGGTGATCCAGATGGTGACCGGCCGAGCTCCATGGGTGAATGTGTCTGATCCGGTGGCCGCCATTTACAAAATTGGGTCCGGCGATGATTTGCCGGAGGTTCCAAGGTTCATATCGGACCAGGGCAAGGACTTTTTGCGGCGGTGTCTGATCAGAGACCCAGAAGAACGGTGGTCTGTCAGTGAGCTTTTGAAGCACCCTTTTGTTCACGAGCAGAAATCTCCACCCAAACAGAATTCAAGAACACCAACGAGTATTTTGGCAAGAATCATGGTACACGATGAACAATTCGGAAACGGTTCAAATTCCGATCATGCCAAAACTTTACAGAACGCCATTGCAGAGGATACAGCAACTGAGCGAAATATCCAAAATTCAGTCATCAAGAATACCCAATTGGGATTGCGACAAAGACTGGGTAACAGTGAAAAGCATTACCATGGAAGAGGAAGACACAGAACAAAGCGAGTTCGTCTCTGTATTGGAATTGCCCTGTTTCTCTCAGTCCATCAAAATGGCAACCAAAAATGGAGTTGGTGA 1116 48.39 MRTSVVSMEWTRGPTIGRGSSAAVSVATDLCSGQVLAVKSVEFTRSDCLKREQRILSRFNCPRVIAYKGFDVTLENGELMCNLLMEFAPGGSILDVMEAAGGRLDEATAQFYTREILSGLEYVHSNGVVHCDIKCCNILVGEDGIKIADFGCARQVEDVSCRNLAGTLIFMAPEVARGEKQGFAADVWAVGCAVIQMVTGRAPWVNVSDPVAAIYKIGSGDDLPEVPRFISDQGKDFLRRCLIRDPEERWSVSELLKHPFVHEQKSPPKQNSRTPTSILARIMVHDEQFGNGSNSDHAKTLQNAIAEDTATERNIQNSVIKNTQLGLRQRLGNSEKHYHGRGRHRTKRVRLCIGIALFLSVHQNGNQKWSW 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5114316 5115431 - Carg13686-RA Car03g00496 144548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00496 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Car03g00496 371 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Car03g00496 371 ProSiteProfiles Protein kinase domain profile. 10 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00496 371 Pfam Protein kinase domain 12 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00496 Car-Chr3:5114316 Car20g00849 Car-Chr20:6095207 5.50E-62 dispersed
Car11g01503 Car-Chr11:12119711 Car03g00496 Car-Chr3:5114316 1.57E-102 wgd
Car19g00708 Car-Chr19:8148277 Car03g00496 Car-Chr3:5114316 2.70E-102 wgd
Car02g00150 Car-Chr2:851898 Car03g00496 Car-Chr3:5114316 1.62E-88 wgd
Car20g00544 Car-Chr20:2991302 Car03g00496 Car-Chr3:5114316 1.25E-90 wgd
Car03g00496 Car-Chr3:5114316 Car07g00274 Car-Chr7:1447122 2.25E-172 wgd
Car03g00496 Car-Chr3:5114316 Car09g00877 Car-Chr9:5372008 7.18E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88719 PF00069 Pkinase 1.80E-53 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00496 K20716 - csv:101210574 480.33