Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00507 ATGGATGGTCCAAGTGGGAGTTCTTCAGGAGGAGGTATGATGAATTTTGTTGATCAAAATAGTCATAATGGGTTTGGTTCCATGATGATGATGATGCCTTTGATGTCCACCTCTCATCAACAACAACACCACCACCACCAGGGAGATGCATGTAGCTCGTTTCTTCCTCCTCCTCCTCCGCCGCCGCCGCCTAATTACACCAACAATAACACTTCTAATTCAATTTCTTACTTCTTGGATGAAACCAACAATAACATCAACGAGGGTAGTAATGGTAATTCTTCATGTGAATTGAAGGCCAAAATCATGGGTCATCCCCACTACCACCGCTTGCTTGTTGCCTATGTCAATTGCCGGAAGGTAATAATAATAGTAAATGGTATTCTTTTTGGGACCCGGGAGCGTAGGCTGAGATCTGAAGCTTTTTGGCAGGTGGGGGCGCCGCCGGAAGTGGTGGCGAGGCTGGAACAAGCGTGTGCATCTGCAGCCACAATGAGTGGTACGTCTTGTATTGGACAAGATCCGGGGCTTGATCAGTTCATGGAGGCTTACTGTGAAATGCTCACCAAATATGAACAAGAACTTTCTAAACCCTTTAGGGATGCCATGCTTTTTCTTCAACGAATTGAGTGCCAATTCAAAGCTCTCTCTATCTCCTCCTCCTCCGATGCTGATTGTCATTCCCTCTGCAAAATAGTTGTCTTTCTACGAATTGACAGTGAGGCATTTGATAGGAACGGATCATCTGAAGAGGAAGTTGATATGAATAGGCAGTCAATTGACCCCTGGGCGGAAGACCATGAACTGAAAGGTCAACTCCTCCGAAAATACAGCAGATACTTGGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCAAAGGAGGCCAGGCAACAGCTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCCGAATCACAGAAGGTAGCTTTAGCTGAATCAACTGGGTTAGATCAAAAGCAAATCAACAACTGGTTCATCAACCAGAGAAAAAGACACTGGAAACCATCTGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCATCATCCACAGTATTACATGGACTCCGTCTTGGGGAATCCTTTCCCATTTGATATCTCTCCCACTCTTCTCTAA 1167 45.07 MDGPSGSSSGGGMMNFVDQNSHNGFGSMMMMMPLMSTSHQQQHHHHQGDACSSFLPPPPPPPPPNYTNNNTSNSISYFLDETNNNINEGSNGNSSCELKAKIMGHPHYHRLLVAYVNCRKVIIIVNGILFGTRERRLRSEAFWQVGAPPEVVARLEQACASAATMSGTSCIGQDPGLDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIECQFKALSISSSSDADCHSLCKIVVFLRIDSEAFDRNGSSEEEVDMNRQSIDPWAEDHELKGQLLRKYSRYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHHHPQYYMDSVLGNPFPFDISPTLL 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5161523 5164227 - Carg13675-RA Car03g00507 144559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00507 388 MobiDBLite consensus disorder prediction 37 71 - -
Car03g00507 388 ProSiteProfiles 'Homeobox' domain profile. 288 351 IPR001356 GO:0003677
Car03g00507 388 Pfam Homeobox KN domain 308 347 IPR008422 GO:0003677|GO:0006355
Car03g00507 388 Pfam KNOX2 domain 170 216 IPR005541 GO:0003677|GO:0005634
Car03g00507 388 MobiDBLite consensus disorder prediction 53 67 - -
Car03g00507 388 ProSitePatterns 'Homeobox' domain signature. 326 349 IPR017970 GO:0000981|GO:0006355
Car03g00507 388 ProSiteProfiles ELK domain profile. 268 288 IPR005539 GO:0003677
Car03g00507 388 Pfam ELK domain 268 289 IPR005539 GO:0003677
Car03g00507 388 Pfam KNOX1 domain 98 160 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00507 Car-Chr3:5161523 Car09g00271 Car-Chr9:1479832 1.13E-76 dispersed
Car11g01493 Car-Chr11:12047728 Car03g00507 Car-Chr3:5161523 3.06E-115 wgd
Car03g00507 Car-Chr3:5161523 Car07g00281 Car-Chr7:1472443 1.07E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3122 PF03790 KNOX1 2.40E-15 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00507 - - cmax:111497440 482.256