Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00517 ATGGCAACCTCATGTTTTGGTTCTCTTTGGATTCGAAAATCAAAGAGCAAACCCTTATCAACACCTTCCTCATTGAAATCCCAGAAGAATTCCGAAATGGAAAATATGGAAAGAAGAAGATTTGATAGCTTGGAATCATGGTCCATGATCTTAGAGTCCGACAATGTGGAAACCTGGGAGACATCGAAAGAGGATCAGGAAGAATGGACCGCTGATCTATCTCAACTCTTCATCGGTAACAAATTCGCCTCCGGTGCTCACAGTCGAATATACCGTGGAATTTACAAACAGAGAGCCGTCGCTGTTAAGATGGTTAGAATCCCAAACCAAAACGAGGAAACCAGAGCCAAACTCGAGCAACAGTTCAAGTCTGAAGTCGCCTTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCAGTAAAAAGCCGCCGGTATACTGCATAATTACAGAGTATATGTCACAAGGTACTCTGAGGATGTATTTAAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATTCTAAGGTTAGCTCTTGACATATCAAGAGGAATGGAATACCTTCATTCCCAAGGAGTAATCCACAGAGACTTGAAATCAAACAACTTGCTCTTAAACGATGAAATGAGAGTAAAAGTAGCCGATTTCGGAACCTCCTGCCTCGAAACACAGTGCCGTGAATCGAAAGGCAACATGGGAACTTACCGATGGATGGCGCCGGAGATGATCAAGGAGAAGCCATATACACGGAAAGTTGATGTTTACAGCTTTGGGATTGTGCTGTGGGAGCTCACCACGGCTCTGCTTCCGTTTCAAGGGATGACCCCTGTTCAGGCTGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCGCCGTTACCGGCGAGTTGTCAGCCGGCGCTAGCCCACCTGATAAAACGATGTTGGGCGGCGAATCCGTCGAAGCGGCCGGATTTCAGTGACATTGTGGTGGCTTTGGAGAAATACGACGAGTGTGTGAAAGAGGGTCTTCCGCTTGCACATCATAGAAGATTGGTAAACCGAAACGCCATTATTGAACGCTTCAAAGCTTGTACCTCAACCGCGTCTTCAATACCTGTCCATGCCTGA 1122 46.17 MATSCFGSLWIRKSKSKPLSTPSSLKSQKNSEMENMERRRFDSLESWSMILESDNVETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQNEETRAKLEQQFKSEVALLSRLFHPNIVQFIAASKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIERFKACTSTASSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5208374 5209629 + Carg13665-RA Car03g00517 144569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00517 373 Pfam Protein tyrosine and serine/threonine kinase 78 329 IPR001245 GO:0004672|GO:0006468
Car03g00517 373 MobiDBLite consensus disorder prediction 15 35 - -
Car03g00517 373 MobiDBLite consensus disorder prediction 15 30 - -
Car03g00517 373 CDD STKc_MAP3K-like 83 327 - -
Car03g00517 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Car03g00517 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Car03g00517 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672|GO:0006468
Car03g00517 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672|GO:0006468
Car03g00517 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672|GO:0006468
Car03g00517 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Car03g00517 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672|GO:0006468
Car03g00517 373 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 361 - -
Car03g00517 373 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 361 - -
Car03g00517 373 SUPERFAMILY Protein kinase-like (PK-like) 50 327 IPR011009 -
Car03g00517 373 SMART serkin_6 76 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00517 373 ProSiteProfiles Protein kinase domain profile. 76 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00517 373 Gene3D Transferase(Phosphotransferase) domain 1 159 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00517 Car-Chr3:5208374 Car18g00156 Car-Chr18:842274 3.77E-140 dispersed
Car03g00527 Car-Chr3:5281167 Car03g00517 Car-Chr3:5208374 0 transposed
Car03g00517 Car-Chr3:5208374 Car07g00289 Car-Chr7:1505471 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88720 PF07714 PK_Tyr_Ser-Thr 1.10E-66 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00517 - - cmo:103484647 718.383