Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00579 ATGACGAGTTCTGGGTTCAGTACAGAGTTCCCAAATGTTGCAGATCCAATGCATGATTCATATCTATCTTGTTTTCCCAAGCTAAACGATGAGAAGTTTCTTCATCAAGACCTCAACTTCCTTCCTTGCTCTTCTTCAATGGCTGTATCTAAAGGGCCCGAGATTCATCAAATGAAAGAACTCTGTGAACCAGGTGGGGAATTCCCAGTTCTTGCAAAGAAGAAAAGGAGAGCTACAAGTGAGCATATTGCCGGAATTGCTCTATCAGATCTGGCTAAATACTTTGATGTTCCTATTACAGAAGCTTCAAGAAGTCTAAATGTTGGATTAACAGTGCTGAAAAGAAAATGCAGAGAGTTTGGGATTCATCGATGGCCGCACAGGAAGATCAAGTCCATTGATGGTCTAATCCGAGATCTTCAGGAAGAAGCAAAGCATAGAGAGGAAGATCAGAAAGCTTTGATGGCAGTGACAAAGAGGCAAATGATGTTGCAGAATGAAAGAGAGAGCATCGAGAGGACACCATTTAGAGAGCTGGAGAGTGAGACCAAGAGATTTAGGCAAGATGTTTTCAAGAGAAGGCATAAAGCTAGAGCTCTAGTAAGCCACAGTCCAGTTTAG 621 42.19 MTSSGFSTEFPNVADPMHDSYLSCFPKLNDEKFLHQDLNFLPCSSSMAVSKGPEIHQMKELCEPGGEFPVLAKKKRRATSEHIAGIALSDLAKYFDVPITEASRSLNVGLTVLKRKCREFGIHRWPHRKIKSIDGLIRDLQEEAKHREEDQKALMAVTKRQMMLQNERESIERTPFRELESETKRFRQDVFKRRHKARALVSHSPV 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5511680 5512584 + Carg00539-RA Car03g00579 144631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00579 206 ProSiteProfiles RWP-RK domain profile. 68 153 IPR003035 -
Car03g00579 206 Pfam RWP-RK domain 86 133 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00579 - - - bhj:120073970 292.352
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00579 Car-Chr3:5511680 Car11g00151 Car-Chr11:850641 4.23E-25 dispersed
Car16g00470 Car-Chr16:2984946 Car03g00579 Car-Chr3:5511680 3.49E-07 dispersed
Car01g01328 Car-Chr1:11846354 Car03g00579 Car-Chr3:5511680 1.89E-10 transposed
Car01g01583 Car-Chr1:13115602 Car03g00579 Car-Chr3:5511680 4.04E-07 wgd
Car03g00579 Car-Chr3:5511680 Car09g00046 Car-Chr9:230493 3.92E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1190 . . . . . . . . . . Cma03g00624 . Car03g00579 . . . . . . . . . . . . . . . . . . Cone8ag0893 Cone12ag0864 . . . . . . . . . . . . . . . Cmo03g00652 . . . . . . . . . . . . . . . . . . . . . . Csa06g03401 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013768 0 4 0 0 0 1 1 1 1 1 0 1 1 1 1 0 1 2 0 1 1 1 1 1 0 1 1 1 0 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3127 PF02042 RWP-RK 2.50E-22 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00579 Car_Chr03 FPKM 0.0 0.0 0.0 0.720561 4.115757 3.001474 4.698683 0.530488 0.413273 0.767861