Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00601 ATGGCGGAAAGTTCAGAAGAGGTCTATCTCCATGGCGATCTCGACCTTAAAATCTTCGAGGCCACCCAGTTGCCTAACATGGACATAGTATCCGAGCGTCTACGTCGTTGCTTCACTGCTTGTGGTACTCTCAACTGCTCCGCCATTAAATCCGTCGCTACCAACTCACGTTCTGCCGCCGGTGAGGGGAAAGTCCACCACAGCCATGGAAAAATCATCACCAGTGACCCATATGTTACCGTCCGGGTTCCTCAAGCCACCGTCGCGCGAACTCGCGTTATTAAGAATTCCCAAAACCCCAATTGGAACGAGCATTTCGTTATCCCTCTTGCACAGAAAATGGCTGAGTTGGAATTCCAGGTGAAGGACGATGATGTCTTTGGCGCTGAAGTTATGGGGACAGTCAAAATCCCGGCTCAGCAAATTGCCTCTGGTCAGACAATTAGTGGGTGGTTTCCAGTGCTTGGCTCAAATGGGAAGCCACCGAAGCCCGGCACTTCACTACGAATTGAAATGAAGTTCACCCCTGTTGAAAAGAATCCGGTGTACCGCCACGGCATTGCTGGAGATCCGGAGCATAAGGGTGTGCGGCACACTTATTTTCCGGTGAGGAGAGGCAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGATGCTGCCGGTGATTGAATTGGATGAAAAGAATGTTTATAGACAAGAGAATTGTTGGGAGGATATCTGCCATGCTATATCAGAGGCTCATCATATGATTTATATCGTTGGTTGGTCAGTTTTTCATAAGATCAAGCTGGTTAGAGAGACAACCAGGCCATTGCCACGAGGTGGGGAACGTATTCTTGGTGATCTCCTCAAATACAAATCAGAGGAGGGTGTTCGAGTATTGATGATGATTTGGGATGATAAGACTTCTCATGATAAGTTCTTCATCAATACAGGGGGATTGATGCAGACACACGACGAGGAAACGAAGAAATTTTTCAAGCATTCTTCAGTGATCTGTGTGCTCTCACCTCGCTATCCAAGCAGCAAGCTAAGCTATGTGAAACAAAAGGTTGTAGGCACTGTCTTCACGCATCATCAGAAATGTGTCCTTGTTGATACTCAAGGATATGGTAATGATAGGAAGATCACTGCTTTTCTTGGAGGTCTTGATCTCTGTGACGGTCGTTACGACACACCCGAGCATCGACTATTCCATGGCCTCGACACGGTATTTAAGGATGATTTTCATAATCCTACATTCCCTGGAGCCAAAGCTCCAAGGCAACCATGGCATGACTTGCACTGTCGGATCGATGGGCCAGCTGCATATGACGTGCTTATAAACTTTGAGCAACGTTGGAGCCGAGCCACAAGATGGACCGAGTTTGGCCTACGCTGCAGGAACATTACTCACTGGCGCGATGCTTTAATCAAGATAGAGCGCATATCATGGATACTAAGCCCTCAAATAACCATCTTAGCTGATGGTTCAATAAAAGTTCCAGAGGATGACCCCAAAGTATATGTTTCAAACGAAAAAGATCCTGAAAACTGGCACGTTCAGATATTTCGATCCATCGACTCGGGATCGGTTAAAGGATTCCCAAGAGATGTCCATGTCGCGGAGTCGCAGAACCTTGTATGTGCCAAAAACTTGGCTATAGAGAAAAGCATTGAAATGGCATATATCCAGGCTATCCGATCGGCGCAACGTTTCATTTACATCGAAAACCAGTATTTTATAGGATCATCATATGGATGGCCGGGATATAAAAATGCCGGGGCTGATAATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCAAGCAAAATAAGAGCCAATGAAAGATTTGTTGTGTATATTGTCATACCAATGTGGCCTGAGGGAGATCCCAATAGCGCTCCCATGCAAGAGATTCTTTATTGGCAGGGACAAACCATGCAAATGATGTATGACATTGTTGCAAGTGAGCTGAAATCATTAGAGCCACCATATTTACACCCTCAGGACTATCTAAACTTCTACTGCCTTGGCAAACGGGAAAAGGTTCCAGAGAATGGGCCAACCACTGATGATGCAACGGTATCTAATTCAATAAAACATCAACGGTTCATGATTTACGTGCATGCCAAGGGGATGATAGTAGACGATGAATATGTAATTATTGGCTCTGCAAATATTAACCAACGATCCATGGCTGGAACGAAGGACACCGAGATAGCCACGGGTGCGTATCAGCCACATCACACGTGGGCGGAGAAAAAGAAACACCCACATGGTCAGATTTACGGATACAGAATGTCGTTATGGAGCGAGCATCTCGGAATGCTCGATCCATGTTTCAACGAGCCAGAAACTTTGGAATGTGTAAGAAGAGTGAATGGGGTAGCTGAGGATAACTGGAAGCGATTCACCGCCGATGAATTCACGACGCTGCAAGGCCACCTCCTCCGGTATCCGGTGCTCGTGGATGGCGATGGGAGAGTCACCCCTCTGCCTGGACATGAAAACTTCCCTGATGTAGGAGGGAAGATAATAGGATCTCATTCAGCTGCAATTCCTGATGTTTTGACCACATAG 2571 46.52 MAESSEEVYLHGDLDLKIFEATQLPNMDIVSERLRRCFTACGTLNCSAIKSVATNSRSAAGEGKVHHSHGKIITSDPYVTVRVPQATVARTRVIKNSQNPNWNEHFVIPLAQKMAELEFQVKDDDVFGAEVMGTVKIPAQQIASGQTISGWFPVLGSNGKPPKPGTSLRIEMKFTPVEKNPVYRHGIAGDPEHKGVRHTYFPVRRGSSMRLYQDAHVPDGMLPVIELDEKNVYRQENCWEDICHAISEAHHMIYIVGWSVFHKIKLVRETTRPLPRGGERILGDLLKYKSEEGVRVLMMIWDDKTSHDKFFINTGGLMQTHDEETKKFFKHSSVICVLSPRYPSSKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNDRKITAFLGGLDLCDGRYDTPEHRLFHGLDTVFKDDFHNPTFPGAKAPRQPWHDLHCRIDGPAAYDVLINFEQRWSRATRWTEFGLRCRNITHWRDALIKIERISWILSPQITILADGSIKVPEDDPKVYVSNEKDPENWHVQIFRSIDSGSVKGFPRDVHVAESQNLVCAKNLAIEKSIEMAYIQAIRSAQRFIYIENQYFIGSSYGWPGYKNAGADNLIPMELALKIASKIRANERFVVYIVIPMWPEGDPNSAPMQEILYWQGQTMQMMYDIVASELKSLEPPYLHPQDYLNFYCLGKREKVPENGPTTDDATVSNSIKHQRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAEKKKHPHGQIYGYRMSLWSEHLGMLDPCFNEPETLECVRRVNGVAEDNWKRFTADEFTTLQGHLLRYPVLVDGDGRVTPLPGHENFPDVGGKIIGSHSAAIPDVLTT 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5595886 5601682 - Carg00561-RA Car03g00601 144653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00601 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824
Car03g00601 856 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Car03g00601 856 Pfam Phospholipase D Active site motif 702 728 IPR001736 GO:0003824
Car03g00601 856 Pfam Phospholipase D Active site motif 357 392 IPR001736 GO:0003824
Car03g00601 856 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 701 728 IPR001736 GO:0003824
Car03g00601 856 Pfam C2 domain 12 154 IPR000008 -
Car03g00601 856 Pfam Phospholipase D C terminal 776 845 IPR024632 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00601 Car-Chr3:5595886 Car07g00350 Car-Chr7:1750871 0 dispersed
Car17g00315 Car-Chr17:1962053 Car03g00601 Car-Chr3:5595886 9.40E-20 dispersed
Car03g00601 Car-Chr3:5595886 Car05g00275 Car-Chr5:1508172 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00601 K01115 - csv:101217251 1605.11