Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00623 ATGCAGCCAACCAACGACGTCGTATTAAGTAGTTCTTTCTCGAATGAAACAAGCAAAGATTTGCAGGGAAGACCGAAGTGTTTGTGTAGCGTCCGCTTTGTCTTCCCTAGTTCTACCTCTCCTTCCGCAACGATGGTTCTCGAGGCGACGATGATCTGTATTGACAACTCCGAATGGATGCGGAATGGAGATTACAGTCCTTCAAGATTTCAAGCTCAAGAAGATGCCATCAATCTTATTTGTGGCGCCAAGACGCAGTCTAATCCAGAGAATACGGTTGGAGTTCTGACAATGGCGGGAAAAGGTGTTCGTGTGCTCGTCACTCCGACCACTGACCTTGGCAAGATACTGGCATGCATGCACGGTTTGGAGATAGGTGGTGAGATAAACCTCGCAGCTGGCATCCAGGTGGCTCAGTTGGCTCTTAAGCATCGTCAGAACAAAAAGCAGCAACAAAGGATTATAGTATTTGTTGGCAGTCCTGTCAAACATGAGAAAAAGTTACTGGAGGCGATTGGAAGGAAGTTAAAGAAGAACAATGTCACCCTTGACATTGTTGATTTTGGCGAAGAAGATGATGGCAAACCTGAGAAACTGGAAAGTCTTCTGGCAGCTGTGAATAGTAATGACACCAGTCACATTGTTCATGTTCCTGCTGGTCCAAATGTGCTCTCTGATGTACTCATCAGTACTCCTATCTTTACTGGAGACGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCGGCGGCTGCTGCTGCTGGTGGCGTATCTGGTTTTGATTTTGGAGTTGATCCCAACTTAGATCCTGAACTTGCCCTTGCTCTTAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAAGAAGCAGCTGCTAAAAAGGCTGCAGAGGAGAATACAAAGCAAGAAAAAGGAGCAGAGCAGCCATCTGGCTCACAGGATGCAACTATGACTGAGCGTCCTGAACTTGCAACTTCTGATGCCGAAAACAAGACTGCTGATTTAATGGATGATGATAATGCACTGCTACAACAAGCACTTGCTATGTCCATGGATAATCCTTCTGCTACCAGTGACATACGAGACATTGACATGTCAGAAGTAGCATCAGATGATCCTGATTTGGCACTTGCTCTTCAGTTATCGGTGCAGGAAGGCTCTAGTGATTCGACAAGTCAGACAGATATGGGCAAATTGTTGGCCGATCAGTCTTTTGTGTCTTCTATTCTAGCTTCACTTCCAGGCGTAGATCCAAATGACCCTTCTGTAAAAGATTTGCTTGCTTCCATGCAAAGCCAAGCCGAGGATAAGAAAAATGAAGACAAAGCACCAAAGGAAGATGAAAAATGA 1344 45.83 MQPTNDVVLSSSFSNETSKDLQGRPKCLCSVRFVFPSSTSPSATMVLEATMICIDNSEWMRNGDYSPSRFQAQEDAINLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTTDLGKILACMHGLEIGGEINLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPVKHEKKLLEAIGRKLKKNNVTLDIVDFGEEDDGKPEKLESLLAAVNSNDTSHIVHVPAGPNVLSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEENTKQEKGAEQPSGSQDATMTERPELATSDAENKTADLMDDDNALLQQALAMSMDNPSATSDIRDIDMSEVASDDPDLALALQLSVQEGSSDSTSQTDMGKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQAEDKKNEDKAPKEDEK 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5701438 5706049 - Carg00583-RA Car03g00623 144675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00623 447 MobiDBLite consensus disorder prediction 410 447 - -
Car03g00623 447 Pfam Ubiquitin interaction motif 368 383 IPR003903 -
Car03g00623 447 Pfam Ubiquitin interaction motif 336 349 IPR003903 -
Car03g00623 447 Pfam Ubiquitin interaction motif 268 281 IPR003903 -
Car03g00623 447 Coils Coil 276 301 - -
Car03g00623 447 MobiDBLite consensus disorder prediction 432 447 - -
Car03g00623 447 Pfam von Willebrand factor type A domain 50 158 IPR002035 -
Car03g00623 447 MobiDBLite consensus disorder prediction 284 302 - -
Car03g00623 447 MobiDBLite consensus disorder prediction 303 318 - -
Car03g00623 447 MobiDBLite consensus disorder prediction 1 21 - -
Car03g00623 447 MobiDBLite consensus disorder prediction 284 324 - -
Car03g00623 447 ProSiteProfiles VWFA domain profile. 49 233 IPR002035 -
Car03g00623 447 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 266 285 IPR003903 -
Car03g00623 447 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 368 387 IPR003903 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00623 K03029 PSMD4, RPN10; 26S proteasome regulatory subunit N10 - csv:101221273 712.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00623 Car07g00367 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g01171 Car-Chr16:9947390 Car03g00623 Car-Chr3:5701438 0 wgd
Car03g00623 Car-Chr3:5701438 Car06g00098 Car-Chr6:655188 0 wgd
Car03g00623 Car-Chr3:5701438 Car07g00367 Car-Chr7:1837956 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1132 . . . . Bpe15g00476 Bpe13g00410 . . . . . Cma07g00417 Car03g00623 Car07g00367 Sed14g1201 Cpe19g00866 Cpe10g00673 Bhi03g00846 Tan03g2094 Cmetu04g2423 . Hepe04g1603 . . . . . . . . . Cone8ag0856 . Cone6ag1691 Cone9ag1613 Lsi01g00589 . . Cme08g00943 . . . . . . Bma03g00956 Bma06g00092 . Cmo03g00701 Cmo07g00415 . . . . . . . . . . . . . . . . . . . . Lsi07g01096 Csa06g03341 Chy02g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002659 1 1 0 2 2 1 4 1 2 2 2 1 3 2 2 4 1 3 4 1 2 1 2 2 2 2 2 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00623 Car_Chr03 FPKM 24.379025 25.474001 35.597324 33.728722 35.920761 34.463409 38.7528 26.701561 29.300997 27.719879