Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00627 ATGGGGCTGTTCAGCTCTTTCCACCGTTCTTCTCCCTTCTTCTCCACCTTGATTGTGCTTCTTCTTGTCAAAGGTTTCAAAGAGGTCTCCGGCGCTACATTCACGTTCGTTAACAAGTGTGAATTCACTGTCTGGCCGGGAATTCTCGCCAGTGCTGGCAGCCCCAAACTGGAATCCACCGGTTTCGAGCTCGTACAGGGTAGTTCTCGCTCTTTCCAAGCTCCGACCGCCTGGTCCGGTCGGTTCTGGGGCCGAACTAATTGCAATCTCGACGGCTCCGGCCGTATCATCTGCAACACTGGCGACTGTGGCTCCGGTGAGATTGAGTGTAATGGAGCTGGCGCCACCCCACCGGCCACGTTAGCCGAATTCACACTCGGTTCCGGGTCGCAGGATTTCTACGACGTCAGTCTCGTCGACGGCTATAATTTGCCGATGATAATTGAGGGAACTGGTGGGTCAGGCACGTGCTCGTCGACCGGCTGCATTACGGACCTGAATCAGCTCTGCCCGGCGGAGCTGAAGGCAGAGGGTGGCGGCGCGTGTAAAAGCGCCTGTGAGGCATTTGCCTCGCCGGAATACTGCTGCAGCGGAACGTATAACTCGCCGGCGACTTGCCAGCCGTCAGTATACTCAGAAATGTTCAAATCGGCGTGTCCCAGATCGTATAGCTACGCTTATGATGACGCCACAAGCACATTCACCTGTAATGGGGCTGATTACACCATCACATTTTGCCCTTCTCCTCCGAGTCAGAAATCTTCGAGGGATTCGTCGCCAGTGATACCAGAGCCAACAACAGAGCAGTCGGGATCAGAGCCAGAGACCAAGCCAGGATCAGAATCGGGATTAGGTTCACTACAAGGAGCAACATTAAGTAATTCTTGGCTTGCAGATATGGCCATAGGAGGCTCTTCCATTGCACGAAAACCAAACATAGCATTTCAATTTGGGTCAAGTATTATATTCTTGGTCGTTCTATCTCTAGGTCTTCTTTTAGAATAA 1005 52.54 MGLFSSFHRSSPFFSTLIVLLLVKGFKEVSGATFTFVNKCEFTVWPGILASAGSPKLESTGFELVQGSSRSFQAPTAWSGRFWGRTNCNLDGSGRIICNTGDCGSGEIECNGAGATPPATLAEFTLGSGSQDFYDVSLVDGYNLPMIIEGTGGSGTCSSTGCITDLNQLCPAELKAEGGGACKSACEAFASPEYCCSGTYNSPATCQPSVYSEMFKSACPRSYSYAYDDATSTFTCNGADYTITFCPSPPSQKSSRDSSPVIPEPTTEQSGSEPETKPGSESGLGSLQGATLSNSWLADMAIGGSSIARKPNIAFQFGSSIIFLVVLSLGLLLE 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5720392 5722041 - Carg00587-RA Car03g00627 144679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00627 334 Pfam Thaumatin family 38 247 IPR001938 -
Car03g00627 334 MobiDBLite consensus disorder prediction 248 284 - -
Car03g00627 334 ProSiteProfiles Thaumatin family profile. 31 247 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00627 - - - csv:101222295 495.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00627 Car-Chr3:5720392 Car06g00510 Car-Chr6:2862907 6.01E-126 dispersed
Car06g00355 Car-Chr6:1934079 Car03g00627 Car-Chr3:5720392 6.52E-38 transposed
Car01g01550 Car-Chr1:12961740 Car03g00627 Car-Chr3:5720392 7.76E-68 wgd
Car12g00381 Car-Chr12:2434079 Car03g00627 Car-Chr3:5720392 3.86E-101 wgd
Car16g01168 Car-Chr16:9936919 Car03g00627 Car-Chr3:5720392 2.95E-89 wgd
Car20g00665 Car-Chr20:3747654 Car03g00627 Car-Chr3:5720392 6.61E-57 wgd
Car03g00627 Car-Chr3:5720392 Car05g00259 Car-Chr5:1442406 1.32E-105 wgd
Car03g00627 Car-Chr3:5720392 Car07g00370 Car-Chr7:1850908 3.99E-56 wgd
Car03g00627 Car-Chr3:5720392 Car09g00086 Car-Chr9:437417 8.43E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00627 Car_Chr03 FPKM 9.900963 10.447307 0.996855 0.295814 30.819197 28.345947 30.635553 0.0 0.0 0.0