Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00628 ATGGCGGAGATAAAGTTAATCTTGGCTCGCCCTATTCAATTGGCGGACCAAGTCACCAAGGCTGCGGACCAGGCTACCAGCTGCAAGCATGAGTGCGCTGACCTCAAAGCCAAGACCGAGAAGCTTGCTACTCTTCTTCGTCAGGCGGCTCGAGCGAGTTCCGATCTCTATGAGCGACCGGCCACTCGGATCATCAACGAAACTGCACAGGCCTTAGATAAAGCTCTTTCTCTTGTGCTCAAATGTACTGGAAATGGCCTTATGAAGCGCCTTTTCACAATTATCCCTGCTGCCGCCTTCCGAAAATCCTGCTCCCAGCTCGATAATTCCATCGGCGATGTCTCGTGGTTGCTCCGAGTTTCCGCCTCCGCCGAGGATCGTGGCGACGAGCATTTGGGTCTTCCCCCAATTGCTGCTAACGAACCCATTCTAGGTTACATCTGGGAACAGATTGCTATTCTCTCAACCGGTTTGCCGGAAGATCGAGCGGACGCAGCAGCGTCGCTGGTTTCTTTGGCGAAAGATAGCGAGAGATATGGGAAACGGATAATTGAAGAAGGCGGCGTTGGGGCGTTGCTGAAATTGCTGAAAGAAGGTAAGGTTGAAGGTCAAGAAAACGCTGCAAATGCGCTAGGGCATTTAGGGCGTGACCCTGAGAATGTTGAGGCCATGATTCAGGCTGGTGTCTGTCAGGTGTTTGCGAAAATTCTCAAAGAAGGTCCGATGAAAGTTCAGGCTGTGGTTGCTTGGGCTGTATCGGAACTCGTTTCTAGTTACCCAAAATGCCAAGATCTCTTTGAACAACACTATATTATCCGCTCGCTTGTTACCCATCTTGCGTTTGAAACAGTTCAAGAACATAGCAAGTACAATATCACTGTCAATAAAGCCACCTCGATTCATGCTCTGGTAATGGCTAGCAACCCCAAAACAAACAATATGTATAAAGCTGTAGATGATGATGATCGACAGCTCCATAGTCGGATTCTTCATCCAATGGGAAATCGAACCCCTAACCAGATGCACGCCGTGGTTACCAACACTATGAATATGCTCTCTGGTGGGTCGGTAGCGGCTGCCACTGCAACTCCCCAGGCAAACCATGGCGAAGGTCACAGCCTTAGCAGCAATGGAAAGCATATTCTTCCACATCATGCCCCTTACCTTCATCATGCTCCTTTCGGCCCCAGCGCGAAAGGTAGGGAGACTGAGGACCCGGCAACGAAAACCCAGATGAAAGCCATGGCAGCTAGAGCCCTTTGGCAGCTTGCCAAAGGGAACTTGACAATCTGCCGTAGTATCACAGAGTCAAGAGCTCTGCTGTGTTTTGCTGTCCTACTTGAAAAGGGGGAACAGAATGTGCGGCATAACTCAGCAATGGCATTGATGGAGATCACTGCCATGGCTGAGGACGATCCTGAGCTGAGAAGGTCCGCCTTCAAGCCGACTTCACCCGCCTGCAGAGCCGTTGTGGAGCAGTTGCTGAAGATCATTGAGAAAGAAGATGCAGATCTCCTCATCCCATGTATCAAATCCATTGGAAATTTGGCCAGGACGTTCCGGGCCACTGAGAAAAGAATGATCACCCCATTGGTGCGGCTTCTGGATGATCGAGACACCGAGGTCTCGAAGGAGGCCTGCATTGCTCTCACCAAATTTGCCTGCACAGACAACTTCCTCCACGTCTACCACTGCGAGGAAATCATAGCGGCAGGTGGGGCAAAGGACTTAGTCCAGCTAGTGTACTTTGGGGAACAAAGTGTTAAAATTGCAGCAGTAACTCTGTTGTGCTACATTGCCCTGCACTTGCCTGATAGAGAGGAGCTTGCACGGGCCGAGACGCTTCCCGTGATCGAATGGGCGTCGAAACAATCTCATTTGACGCAGGACGAAACAAATGAAAGACTCTTACATGAGGCTGGAAGTAAGCTAGAGCTGTTTCAATCTAGAGGTCCAAGAGGATACCATTGA 1971 50.33 MAEIKLILARPIQLADQVTKAADQATSCKHECADLKAKTEKLATLLRQAARASSDLYERPATRIINETAQALDKALSLVLKCTGNGLMKRLFTIIPAAAFRKSCSQLDNSIGDVSWLLRVSASAEDRGDEHLGLPPIAANEPILGYIWEQIAILSTGLPEDRADAAASLVSLAKDSERYGKRIIEEGGVGALLKLLKEGKVEGQENAANALGHLGRDPENVEAMIQAGVCQVFAKILKEGPMKVQAVVAWAVSELVSSYPKCQDLFEQHYIIRSLVTHLAFETVQEHSKYNITVNKATSIHALVMASNPKTNNMYKAVDDDDRQLHSRILHPMGNRTPNQMHAVVTNTMNMLSGGSVAAATATPQANHGEGHSLSSNGKHILPHHAPYLHHAPFGPSAKGRETEDPATKTQMKAMAARALWQLAKGNLTICRSITESRALLCFAVLLEKGEQNVRHNSAMALMEITAMAEDDPELRRSAFKPTSPACRAVVEQLLKIIEKEDADLLIPCIKSIGNLARTFRATEKRMITPLVRLLDDRDTEVSKEACIALTKFACTDNFLHVYHCEEIIAAGGAKDLVQLVYFGEQSVKIAAVTLLCYIALHLPDREELARAETLPVIEWASKQSHLTQDETNERLLHEAGSKLELFQSRGPRGYH 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5725110 5727080 - Carg00588-RA Car03g00628 144680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00628 656 Pfam Armadillo/beta-catenin-like repeat 183 214 IPR000225 GO:0005515
Car03g00628 656 Pfam Armadillo/beta-catenin-like repeat 217 256 IPR000225 GO:0005515
Car03g00628 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 187 229 IPR000225 GO:0005515
Car03g00628 656 Coils Coil 35 55 - -
Car03g00628 656 MobiDBLite consensus disorder prediction 363 405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00628 - - - csv:101221744 1134.01
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00628 Car07g00371 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00628 Car-Chr3:5725110 Car05g00031 Car-Chr5:173043 5.24E-112 dispersed
Car20g00666 Car-Chr20:3754462 Car03g00628 Car-Chr3:5725110 0 wgd
Car03g00628 Car-Chr3:5725110 Car07g00371 Car-Chr7:1853404 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1117 . . . . . . . Bma15g00941 . . Cma03g00681 Cma07g00424 Car03g00628 Car07g00371 Sed14g1200 Cpe19g00863 Cpe10g00667 Bhi03g00862 Tan03g2088 Cmetu04g1901 . Hepe04g1596 . . Cla01g01984 Cam01g2077 Cec04g1736 Cco04g1802 Clacu01g2099 Cmu01g1974 Cre04g1650 . . Cone6ag1684 Cone9ag1606 Lsi01g00597 . . Cme08g00933 Blo05g00710 Blo06g00299 . . Bpe10g00158 Bpe06g00129 . . Sed01g0209 Cmo03g00706 Cmo07g00421 . . . . . . Bhi10g01872 Tan05g1164 Cmetu11g2261 . Hepe08g0276 . . . . . . . . . . Csa06g03331 Chy02g00569 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006048 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00628 Car_Chr03 FPKM 77.095863 81.575768 29.821568 29.545658 63.429741 63.955708 61.566673 22.94952 25.168463 21.858496