Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00645 ATGAGGATACTCTGTGATTCCTGCGAAACTGCTGCAGCAACTTTGTTTTGTGCAGCTGACGAGGCTGCTCTCTGCACAGCCTGTGATGCAAAGGTGCACATGTGCAACAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAATCCAAGCGAAGTTCCTCGCTGTGATATATGTGAGAATGCACCAGCTTTCTTTTGGTGTGAGATAGATGGGAGTTCCTTGTGCTTACAATGCGACGTGATTGTTCATGTGGGAGGTAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGAGAGTTGAGTTTCCAGGGGATACACAAAATGATGTGAAGGGCCCAAATGCAAAGCCGATGGAACAGGTTGAGACAGTGAGAGGCCAGAATCAAGAAAGGGGTGAGGAGATTGAGAAGCAGGAAGAAGATTTGAGATTCTCTGGTGTTAAAGGGTATTCAAATGGAGATAGGCACTCCAAGCGGCCTAATAAAGTGATTGATTTGAACATTTAG 510 46.86 MRILCDSCETAAATLFCAADEAALCTACDAKVHMCNKLASRHVRVGLANPSEVPRCDICENAPAFFWCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDTQNDVKGPNAKPMEQVETVRGQNQERGEEIEKQEEDLRFSGVKGYSNGDRHSKRPNKVIDLNI 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5830640 5831512 + Carg00605-RA Car03g00645 144697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00645 169 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Car03g00645 169 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Car03g00645 169 MobiDBLite consensus disorder prediction 127 145 - -
Car03g00645 169 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car03g00645 169 MobiDBLite consensus disorder prediction 105 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00645 - - - csv:101206016 286.574
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00645 Car07g00389 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00645 Car-Chr3:5830640 Car16g00643 Car-Chr16:4091604 8.63E-73 dispersed
Car12g00406 Car-Chr12:2587799 Car03g00645 Car-Chr3:5830640 2.34E-20 wgd
Car03g00645 Car-Chr3:5830640 Car07g00389 Car-Chr7:1970360 1.16E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1083 Blo04g00894 Blo16g00074 . Bda10g00172 . Bpe13g00423 . Bma15g00960 Cmo04g00794 . Cma03g00703 Cma07g00442 Car03g00645 Car07g00389 . Cpe19g00845 Cpe10g00649 Bhi03g00888 . . . . . . Cla01g01962 Cam01g2052 Cec04g1710 Cco04g1775 Clacu01g2073 Cmu01g1950 Cre04g1625 . . Cone6ag1668 Cone9ag1590 Lsi01g00620 . . Cme08g00909 . Blo06g00321 Bda11g01843 . . . . Bma06g00103 . Cmo03g00728 Cmo07g00440 . . . . . . . . . . . . . . . . . . . . . Csa06g03304 Chy02g00591 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00282 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 2.1e-83 306.6
Car02g00898 . 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 51.3 8.8e-58 221.5
Car10g00391 CCT 58 412 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 1.8e-55 213.8
Car02g00898 . 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.5 2.1e-64 243.4
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.7 2.5e-92 336.3
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 7.1e-87 318.2
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT3G07650 53.2 3.5e-86 315.8
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT3G07650 56.5 4.6e-86 315.5
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT5G48250 58.8 5.8e-89 325.1
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 3.8e-88 322.4
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.5e-84 310.5
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.7e-84 308.5
Car07g00641 . 1 383 C2C2-CO-like Transcription Factor Family AT5G48250 58.8 5.8e-89 325.1
Car20g00602 CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 3.8e-88 322.4
Car19g00649 CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.5e-84 310.5
Car11g01444 CST 42 454 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.7e-84 308.5
Car20g00702 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 50.2 8.7e-44 174.9
Car16g00643 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 3.9e-56 214.9
Car04g00690 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 6.7e-56 214.2
Car07g00389 CST 1 139 C2C2-CO-like Transcription Factor Family AT2G21320 66.9 2.3e-48 189.1
Car03g00645 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 8.8e-48 187.2
Car16g00643 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 7.6e-58 220.7
Car04g00690 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 3.2e-56 215.3
Car07g00389 CST 1 138 C2C2-CO-like Transcription Factor Family AT4G38960 71.8 2.4e-51 199.1
Car03g00645 CST 1 106 C2C2-CO-like Transcription Factor Family AT4G38960 82.1 3.2e-48 188.7
Car12g00406 CST 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.2e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011988 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3133 PF00643 zf-B_box 9.70E-06 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00645 Car_Chr03 FPKM 5.655419 5.814943 191.102539 183.07402 12.31498 14.686935 13.889375 36.837955 38.057713 35.737629