Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00652 ATGGCAGTAGCAGAGGGACGAGTCATCCGCTGCAACACCATTGATTCATGGAACCACCAAATTCAGAAGGGCAATGCCTCTCAGGAACTGATAGTGGTGGATTTCACTGCATCATGGTGTGGTCCGTGTCGGTTCATTGCGCCTTTTCTAGACGAGCTTGCTCAGAAATTTCCCAGTGTCACATTTCTCAAGGTTGATGTGGATGATCTGGAGTCGGTAGCTAAAGATTGGGGGGTGGAGGCAATGCCTACTTTTATGTTCCTGAAAGAGGGAAGAATTGTGGACAAGGTGGTTGGAGCTAAGAAGGAAGAACTGCAGCAGACTGTATTCAAGCACATGGCTGCTACTTCTTCTGCCTGA 360 48.33 MAVAEGRVIRCNTIDSWNHQIQKGNASQELIVVDFTASWCGPCRFIAPFLDELAQKFPSVTFLKVDVDDLESVAKDWGVEAMPTFMFLKEGRIVDKVVGAKKEELQQTVFKHMAATSSA 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5862279 5863272 + Carg00612-RA Car03g00652 144704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00652 119 Pfam Thioredoxin 13 109 IPR013766 -
Car03g00652 119 ProSitePatterns Thioredoxin family active site. 32 50 IPR017937 -
Car03g00652 119 ProSiteProfiles Thioredoxin domain profile. 1 114 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00652 K03671 trxA; thioredoxin 1 - csv:101203181 202.986
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00652 Car07g00403 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00248 Car-Chr3:3693337 Car03g00652 Car-Chr3:5862279 5.25E-34 dispersed
Car03g00652 Car-Chr3:5862279 Car04g00168 Car-Chr4:926090 1.32E-38 dispersed
Car15g00188 Car-Chr15:998505 Car03g00652 Car-Chr3:5862279 8.05E-28 dispersed
Car15g00581 Car-Chr15:3215042 Car03g00652 Car-Chr3:5862279 7.05E-16 dispersed
Car01g01512 Car-Chr1:12800636 Car03g00652 Car-Chr3:5862279 3.71E-45 wgd
Car12g00415 Car-Chr12:2649762 Car03g00652 Car-Chr3:5862279 1.14E-31 wgd
Car03g00652 Car-Chr3:5862279 Car05g00225 Car-Chr5:1177976 1.48E-32 wgd
Car03g00652 Car-Chr3:5862279 Car07g00403 Car-Chr7:2044337 1.84E-79 wgd
Car03g00652 Car-Chr3:5862279 Car09g00116 Car-Chr9:564670 2.71E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1058 . . . . . . . . . . Cma03g00711 Cma07g00455 Car03g00652 Car07g00403 Sed14g1166 Cpe19g00834 Cpe10g00643 Bhi03g00902 Tan03g2039 Cmetu08g0881 . Hepe04g1561 . . Cla01g01949 Cam01g2038 Cec04g1696 Cco04g1761 Clacu01g2060 Cmu01g1937 Cre04g1611 . . Cone6ag1656 Cone9ag1580 Lsi01g00634 . . Cme08g00895 . . . . . Bpe06g00034 . . . Cmo03g00737 Cmo07g00452 . . . . . . . . . . . . . . . . . . . . . Csa06g03291 Chy02g00605 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009315 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00652 Car_Chr03 FPKM 70.375259 76.5756 52.342445 56.93829 34.105431 33.036354 33.364376 88.430794 86.522408 85.928444