Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00664 ATGTTGTGGAAGGAGGAGCTTGTGCTCTTAGCTCAAAACTATTTTGACACTACGACAGTGGCGGCAGTTCTTTCCATAGGTATTTTAGTGTTGGTTTCGAAAGTTTGCTGGAGACAGAGGAGCAAGAATGTTGGAGGAATTCCTGGTCACTTGGGGTTACCCTTTGTAGGGGAAACCTTCTCTTTTCTTTCTGCTAATAACAGCACCAGAGGGTGTTACCAATTTGTCAGGCTCCGCCGGTTGTGGCATGGTAGGTGGTTCAGGACAAGGCTATTTGGAAAAATCCATGTGTTTGTTCCAAGTGCAGAAGGTGCAAAGGCAATACTTGCCAATGATTTTGTCCAATTCAACAAGGGATACGTGAAATCCATGGGAGATGCTGTTGGGGAGAAGAGTTTACTATGCGTTTCCCACGAGGATCACAGAAGGATTAGGCGTCTTCTAGCTGATCCTTTCTCCATGACTTCTCTGTCTAAGTTTGTCAAACAATTTGACGACATGCTCTCCAAAAGGCTACAGAAACTAGTAAAAGATGGGAAAAGTTTTGTACTGCTTGATTTCAGCATGAAGATAACATTCGATTCCATGTGCAATATGCTAATGAGTCTAAGAGATGAATCTACACTCAGGCAGATTGAAAAAGACTGTTCAGCCGTCTCTGATGCCATGTTATCTCTCCCATTCATGATTCCAGGAACTAGGTACTACAAAGGCATCAAGGCACGAAACCGACTAATGGAAAGGTTAAGAGAAATAATATCCAGGCGACGGAAGGGAGAGGAGTCACCAGAAGACTTCCTGCAGTCAATGTTGCAGAGAGATTCGTATCCTCCGGATCAGAAGTTAGATGACTCAGAGATAATGGATAACCTTTTGACACTGATAATTGCAAGCCAAACTACCACAGCTGCTGCTATGATGTGGAGTGTCAAGTTCCTGGATGAGAACAGAGAGGCCCAAGAAAGGCTGCGGGAGGAACAGTTGTCAATTCTACGAAAGAAGGAAGATGGAGAACTACTTACTCTTGAAGATCTTAATAAAATGTCCTTTGGTTCAAAGGTCGTCAAAGAGACGTTGAGAATGTCCAATGTTTTGCTGTGGTTTCCCCGTGTGGCACTAGGGGATTGCAGATTAGAAGGTTTTGAAATAAAGAAAGGATGGCATGTGAACATCGATGCAACATGCATTCATTATGACCCAGATTTGTACAAGGACCCCATGCAATTCAACCCTTCGAGATTTGATGAAATTCAAAAGCCATACAGTTTCATACCTTTTGGATCTGGACCCAGGACCTGTCTCGGAATCAACATGGCCAAATTAACAATGTTGGTCTTTTTGCACAGGATGACTGGAGGGTACAGGTGGACGGTTGATGATCCAGATCCTTGCCTCGAAAAGAAGGCACATATCCCTAGGCTGAGAAGCGGCTGCCCCATTACTTTGAAGACCTTGTAA 1458 43.9 MLWKEELVLLAQNYFDTTTVAAVLSIGILVLVSKVCWRQRSKNVGGIPGHLGLPFVGETFSFLSANNSTRGCYQFVRLRRLWHGRWFRTRLFGKIHVFVPSAEGAKAILANDFVQFNKGYVKSMGDAVGEKSLLCVSHEDHRRIRRLLADPFSMTSLSKFVKQFDDMLSKRLQKLVKDGKSFVLLDFSMKITFDSMCNMLMSLRDESTLRQIEKDCSAVSDAMLSLPFMIPGTRYYKGIKARNRLMERLREIISRRRKGEESPEDFLQSMLQRDSYPPDQKLDDSEIMDNLLTLIIASQTTTAAAMMWSVKFLDENREAQERLREEQLSILRKKEDGELLTLEDLNKMSFGSKVVKETLRMSNVLLWFPRVALGDCRLEGFEIKKGWHVNIDATCIHYDPDLYKDPMQFNPSRFDEIQKPYSFIPFGSGPRTCLGINMAKLTMLVFLHRMTGGYRWTVDDPDPCLEKKAHIPRLRSGCPITLKTL 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5918511 5921251 + Carg00624-RA Car03g00664 144716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00664 485 PANTHER CYTOCHROME P450 26 19 483 - -
Car03g00664 485 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Car03g00664 485 SUPERFAMILY Cytochrome P450 37 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car03g00664 485 Gene3D Cytochrome P450 37 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car03g00664 485 PANTHER CYTOCHROME P450 FAMILY PROTEIN 19 483 - -
Car03g00664 485 Pfam Cytochrome P450 49 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car03g00664 485 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car03g00664 485 PRINTS E-class P450 group I signature 306 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car03g00664 485 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car03g00664 485 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car03g00664 485 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car03g00664 485 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car03g00664 485 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car03g00664 485 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car03g00664 485 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Car03g00664 485 Coils Coil 316 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00664 - - - cmax:111478438 946.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00664 Car-Chr3:5918511 Car08g00858 Car-Chr8:5730100 9.12E-68 dispersed
Car06g00793 Car-Chr6:6124164 Car03g00664 Car-Chr3:5918511 1.40E-97 transposed
Car12g00427 Car-Chr12:2734101 Car03g00664 Car-Chr3:5918511 8.12E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1026 . . . . . . . . . . Cma03g00726 . Car03g00664 . Sed11g1049 . Cpe10g00632 Bhi03g00926 Tan03g2013 Cmetu03g0864 . Hepe04g1544 . . Cla01g01935 Cam01g2019 Cec04g1677 Cco04g1741 Clacu01g2040 Cmu01g1916 Cre04g1592 . . . . Lsi01g00654 . . Cme08g00877 . . . . . . . . . Cmo03g00751 . . . . . . . . . . . . . . . . . . . . . . Csa06g03271 Chy02g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013553 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00664 Car_Chr03 FPKM 19.330175 18.594238 27.310385 28.670017 20.073032 21.620136 21.322519 23.819324 22.39842 23.780106