Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00669 ATGGGCACTGTGATTCGGCTCCAGTTCTTGGTGCCTGGAAAGTGTCCACAATGTTCATGGTCCTTCTCTGACATCATGATCTTATTCCGTCGGCCTCACATTTGGAGAAATTTTACAGTTTTGGCACTCGCCGGAACGGAGACGAAGGATTATCCTCATCATCTAAATACAAAATTGGAACCTTCAATCGTGAACACCCATTTCGCGAATCAGGTAGATTTGGTCGAAGTTAACAGCGAGTTGAAAAAATTAGTGAGAACCAGTCAGTTGAAAGATGCACGCGACATGTTTGATAAAATGCCTCAAAGGGATGGGGTTTCGTGGACTAATATTATTTCTGGGTATGTCAATGCCTCAGACTCCTCTGAAGCCTTGCTTTTGTTCTCTAAGATGCGGCTTCAGTCTGAGCTCCGAATTGATCCCTTTGTGCTTAGTCTTGGTTTTAAGGCTTGTGGGCTCGGTTTGAATTGTTCTTATGGCACAAATTTGCATGGGTTTTCAATCAAAACAGGTCTAGTCAACTCTGTTTTCGTGGGTAGCGCTCTTCTCGACATGTATATGAAAATTGGAGAAGTTGGGAGAAGTTGTGAAGTGTTCGATGAAATGCCAACAAGAAATACTGTGGCTTGGACGGCAGTTATAACTGGGCTTGTTCGTGCTGGTTATAACGAGAAAGGGCTGGCTTACTTTTCTGAAATGGGGAGGTCGAAGGTGGAATATGACTCGTATGCATATGCTATAGCATTGAAGGCCAGTGCTGATTCAGGTGCACTGAATCATGGAAGAGCAATTCATACACAGACATTGAAGAAAGGATTCGATGAGAGCTCCTTTGTGGCCAATTCGCTGGCTACCATGTATAACAAATGTGGTAAGCTAGATTATGGTTTGTATATGCTTGGAAAGATGAGGGCTCCTGATGTCGTTTCGTGGACGACAATGGTAACGACCTACGTTCAAATGGGTAAGGAGGAATGCGGGATTCAAGCATTTAGAAAAATGCAGGACAGCAATGTGATTCCAAATGAATATACATTTGCTGCTGTTATCTCTGGTTGTGCCAATCTTGCACGGTTGAAGTGGGGGGAACAGCTACATGCTCATGTTTTACTTGTGGGGTTTCTGAATGCTTTGTCAGTTGCTAATTCTATCATGACCATGTACTCAAAATGTGGGGAGTTAGCTTCAGTTTCAAAGGTATTTTGTTCCATGAATTTTAAAGATGTCATTACTTGGAGCACTATAATTGCTGCATACTCTCAAGTAGGCTATGGCAAAGAAGCTTTCGAGTATCTATCACAGATGAGAAGCGAAGGACCAAAACCAAATGAGTTTGCCCTGGCTAGCGTTCTTAGTGTATGTGGAAGTATGGCGATTCTCGAGCAGGGGAAGCAATTACATGCTCATGTTTTGTCTGTTGGGTTAGAACAAACAGCCATGGTATGTAGTGCTCTCATTATTATGTACGCAAAATGTGGGAGCATCACGGAAGCTTCTAAAATATTTATGGATTCATTGAAAGATGACATTATTTCATGGACAGCTATGATCAGTGGGTATGCGGAACATGGACATAGCCAAGAAGCCATTGAATTGTTTGAAAGTATCCAAAAGGTTGGTTTGAGACCAGACTCGGTGACCTTCATCGGCGTTCTTACTGCGTGTAGCCATGCAGGAATGGTTGACCTTGGCTTCCACTACTTCAACTCAATGAGTAAAGATTATCACATCACTCCTTCAAAAGAACACTATGGATGCATGATCGATCTTCTTTGTCGAGCAGGGCGATTAAACGACGCAGAGAGCTTGATTAGAAGCATGCCATTTCAACGGGACGATGTAGTCTGGTCTACTTTGCTGAGGGCATGTAGAATACATGGCGATGTTGAGTGTGGACAACGTGCTGCTGCGGAAGTTCTAAAGTTAAACCCAAATTGTGCTGGGACTCACATAACCTTAGCAAACATTTTTGCGGCCAAAGGAAAGTGGAAGGAAGCAGCCAATATAAGAACGATAATGAAATCAAAGGGAGTGGTTAAGGAGCCAGGATGGTCTTCGATAAAGCTCAAGGATAGCGTTTTCGCGTTCGTTGCTGGAGATCGTTCTCTGTCACAAGGAGAAGACATATACAGAATGCTGGAGGAGTTGGCTTCAGGAATGGAAATCTATATTCTTGAATTGAACCATTTAGTTACTGATATGGAAGAATAG 2211 42.92 MGTVIRLQFLVPGKCPQCSWSFSDIMILFRRPHIWRNFTVLALAGTETKDYPHHLNTKLEPSIVNTHFANQVDLVEVNSELKKLVRTSQLKDARDMFDKMPQRDGVSWTNIISGYVNASDSSEALLLFSKMRLQSELRIDPFVLSLGFKACGLGLNCSYGTNLHGFSIKTGLVNSVFVGSALLDMYMKIGEVGRSCEVFDEMPTRNTVAWTAVITGLVRAGYNEKGLAYFSEMGRSKVEYDSYAYAIALKASADSGALNHGRAIHTQTLKKGFDESSFVANSLATMYNKCGKLDYGLYMLGKMRAPDVVSWTTMVTTYVQMGKEECGIQAFRKMQDSNVIPNEYTFAAVISGCANLARLKWGEQLHAHVLLVGFLNALSVANSIMTMYSKCGELASVSKVFCSMNFKDVITWSTIIAAYSQVGYGKEAFEYLSQMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTAMVCSALIIMYAKCGSITEASKIFMDSLKDDIISWTAMISGYAEHGHSQEAIELFESIQKVGLRPDSVTFIGVLTACSHAGMVDLGFHYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLNDAESLIRSMPFQRDDVVWSTLLRACRIHGDVECGQRAAAEVLKLNPNCAGTHITLANIFAAKGKWKEAANIRTIMKSKGVVKEPGWSSIKLKDSVFAFVAGDRSLSQGEDIYRMLEELASGMEIYILELNHLVTDMEE 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5977082 5979401 - Carg00629-RA Car03g00669 144721

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00669 736 Pfam E motif 626 687 IPR046848 -
Car03g00669 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Car03g00669 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Car03g00669 736 Coils Coil 720 736 - -
Car03g00669 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Car03g00669 736 Pfam PPR repeat 578 607 IPR002885 -
Car03g00669 736 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Car03g00669 736 Pfam PPR repeat family 509 556 IPR002885 -
Car03g00669 736 Pfam PPR repeat family 306 355 IPR002885 -
Car03g00669 736 Pfam PPR repeat 180 205 IPR002885 -
Car03g00669 736 Pfam PPR repeat 208 237 IPR002885 -
Car03g00669 736 Pfam PPR repeat 482 505 IPR002885 -
Car03g00669 736 Pfam PPR repeat 106 132 IPR002885 -
Car03g00669 736 Pfam PPR repeat 410 439 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00669 - - - cmax:111478417 1438.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00669 Car-Chr3:5977082 Car16g00055 Car-Chr16:375307 1.29E-45 dispersed
Car03g00669 Car-Chr3:5977082 Car17g01117 Car-Chr17:8612112 8.64E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1005 . . . Bda10g00142 . . . . . . Cma03g00734 . Car03g00669 . . . . . . . . . . . . . . . . . . . . . . Lsi01g00663 . . . . . . . . . . . . Cmo03g00764 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009680 1 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 0 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00669 Car_Chr03 FPKM 0.79655 1.28995 0.517265 0.900678 0.955539 1.144577 1.232891 0.0 0.0 0.0