Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00673 ATGGACAATCTCTCCCATTCTCGCCTTCCCAACAGGGGTTCTACCTCGCTTTCTAAGAAAATCTGCAATGGCGGTCATGGCGGTCATGGCGGTCATGGCGCCGGGCATTTTGCAGCTCAAACTATCTACGATGACGTTTATGGCGGTCCTCCCAAGTTTGGAGTCTCTGCTTTGTCTCCTCGCTTCGAAGACTACGGTGAGATTTTCGGGAGCTTCCACGCCCTCCGTGCTTCCTCGATTCCGATTCTCGATCTTCCAGCTGTCGATGAATCCGAGGTCTTTTTCGACGCTCGGAGCTCTGCATTTGACTATGCGGAGGTTTTTGGAGGATTCGATGGTCTGGATTTTGCGATTTCTTATGAGGAACTGGTTAGTCCGTCCAGACGCGTTGACAATGCTTCTTCGGACGAAGCTTGGACTCCAGCAGGAACTGAATCTTTGTCAGATTGCTCGGACCATTCCGGAAATTCTCGTTGTATGTCAAATGGAGACTCTAATCAGTCATGTGATGGAAGCACTGAGTTTTGCATATCGTACAGCAAGGTTAACAGCGAAAACATTGGACATATATCAAATGGGAAGATACACGTAACCCAGTTGGAGATGCTTCCTGGACACTCATATCTGGTTGATGAAGCAAATCCCTCACCGAAGGGAACAGATGGTGATCCATCACTGCCGACCAATGATGATAACTATCTCAATATAGATTTTGATACAGGAAAGGTGAAGGGAAAACATCCAAGGAACACTAGGCCACATCCAAGGAACACTAGGCCACCCCCAGTAGACGGTAATGGCTCTGGACCATTATTAGAGGATAACCTTGTTTCTCAAAATGGATATGGTAGAGGTGTTTGTCGTTCTCATGAGGATTTCATAAGCGTATCTGAAATAAGCCTTAGAACTGAGCCCTCTCAAGTGCCACCACCTTCTCGACCACCTCCCAAGTTTGCTACCAAGAAGGGGGACTCCACGAAAATGACTTTGAGTTGTGGAGAAGCTGCTTCTGAAATAATTCCGGATGATCGTACTCTTCCTTTATTTCATGTGGAGGTAGATGCTAGCTCATCTGCAGCCGTCTCTGCTGCAGCTATGAAAGGAGCAATGGAAAAAGCTCTAGCACAGTTACAGAATGCAAAAGATTTGTGGGAGAGGAAAAAGGAAGGGGTCCATGGACGGATGAGACCGGATGCAAAAAGTGATATGAGAGAAAAGGAAGGAAATTTGACAAAGATTCCAAATAGATTCGAGAGTTTGGCCGATGAAAGTGTACAGATTATTGGGGAAATTCATGACAATGGAATGAATTTTCCTGCTAGAGAGGAGAGGCAAAAGGATGTGAGGGCAACTGAAGTTTGTTCAACACACTATGGAGGAGAGGAACTTTTAACAGCTGCTGAAAGGACCGTACCAATTAGAAGTGGGAGTAGATTTCTTGTGTCTGACAACTATGATTGCTGCAGTGAATGGAAAGATGCCACAGGGTTTTTTGAATTGGCCAGAGCAGATATATCCAGAAAGGAATTTGAGTCGATGAACAATGATGCGGTTCCCAACATTCTGGCTGGACAAATTAGAGTAGAGACCATCAATAAAGCATGGGAAAACGATAAAGATCAAGACAAGAGAGGGAAACCATTCCATACATTTCATGTTCTGAATGAGGAGGTGAAGAATTTGGAGAATATGGTTCATGGAAAGGAGGAAGATAAGATAAAACTAAAACCAAATAAAAACGAGACTAGGCAAAAAGAGCAGGTGAAATTAAAAATTCATCAAGATGTTTGTGATCTTGACGCAAATGATAGGAAATTTGGAGTTGCTCAAGAGTTTGTGGAAGTAAAAAGGCAAATATCTGATGCTAGTGAACTAGAGAAACATGAAAAACCTATTGAGTTTAGACAACTGGACAGCGGGCTAAAAGTTGAGCAACCTATTTCACCAAGGGATATTGAACAAGAAAAGAAAAAGGTTGTTAAAAGAAAGGAAAATGGAAATATTCTCAAGGAACCTCTCATTGAGAATGAGAAAAGAGAGATGTTCATTGAGGCTTCTGAAAGGGAAAAACTTGAGCAAAAAATGAGAATGTTCCTCGAGCAACAAAAAACTAAGAAAAGACTGGATTTGGTTCTTGAGGATGACAACTTTAAGGAACAGATGATTCGTGAAAGACAACTGGAAGGAGTTCATGAGATGGACGATCATGGGAAAAAGGGAAAAGAGACTGCCAAGGTTGGAGTGAGTGAGAGACCTGAATTAGCTCATGAGAGAGAAGATGACGACAAATGGGCACAAGATTTTCCGTACAGAGAAGTATGTCAAAAAGGAGTTGATGATTCATTTCAGATGTTGAACATTGAAGGCATGCCAAGAGATGCGGGTAAGTGTGAAGTGACTCAGATGTTGGTTAAAGAATTTCAAGATAGTGCACATCTGAAGGGTATAAGCTTGGAGCATGATGAATTAGAGAGATTGGAGGACAGACACAAAGGAAACACAACAATACGATCTCAAGTATATGTGGAAATGAATGATTTGGGGATATCTGCTGCTGCAATAAAAATGAACGATGACAAAAACCACTTACCCACGGGACTAGCATGTTCAACGGGAATGTATGAAAAATTCTCTCATGTAGATGAAGGTGAAGAGACAACGACTGCAGTCACAGTTAATGAAACTTCGTCCGGAAGTGGTGGAGCTGAAAATCTGGAACTTAAAAAAAATGCTTGTGTGTCGAGTGCTTACCAGGCAGAGGTAGAACATAAGAAAGTTCCAGTTGAAATGGAAGATGCAAATATTCAGCTTTCTTTCAATGAATGGACCAAAAGAACAGTCGAAGAAACAAGCTTTCAACCCAAACTTGGACATACAGAAGCAGAACCAACTAATTCGGAAGATGAACTTTCATCTGAAAAGTCAACAAGCATGGATGAGGGAAAGAATGAAACTGAAGAGTGCGTTGTTAAGATGGAAGATATGAAAACATCTCTTCCTCTGGATAAAAATGATGAGAAAGCAGGCCAAGCTGATGTTTGCATGGAAGAGTTTTTAGGGAGAAAGAAGTTTGTTAACCGAATGGGTTCTGATCCTGAACATCCAGAAAGTAACTTGTTCTGTTGTCTCGAAGATAAAGTGAAGTCCTCTGATCAGGTTGAAGATAAGCGACAGAAAGTGTCAGTTCAGTGGTTCAATGTAAGGGCTGAGAAAGGAAGTGAATTGGAGTCAAGTAGGCCAAATATTTCAGAAAGGACACAAAAGAGCGGGGAATTCATGCGTGGGGTCAATGTAAATCCGGCCACAGAAAGAAAGGAAAAGATCATAAACCAGAGCCTTACATCTAAAGGAAAAGAAAGCGAGAGAGCGAGGAGCGAAGCAGAATTTGAAAATGATAGTCTTCAAAAATCGGAAGAAGAGAGGGAAAGGGAGAAAGAGAGAGAAAAGGATAGAATGCCTATTGACAGAATTGCTCTCGAACCACGTGATAGAGTAGGTGCCGAAACTCGTGAAAAGGCAGAAAGGGCTGCTCTGGAGAGGATGACTGCTGAAGCCCGACAAAGAGCATTGACAGAGGCACGCGAAAGATTGGAGAAGGCATGTGCAGAGGCAAGAGAAAATTCATTGGCTGGAAAGGCAACTATGGAGGCAAGGGTAAAGGCAGAGCGTGCAGCCGTAGAAAGAGCAACTGCAGAGGCCAGGGAACGAGCTGCAGAGAAAGTCATGTCTGACAAGACTTCCTTTGGGGTGCGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCTTCTAACATAAATATTGAAATGAGACAGAAGTCTTCATCCTCCGGTCAGCCCAGCCTTCAATCTCAGAGTTTTGGCTCTTCCATTGCTTCAAGATATGCCTATTACTCAGCTTATGATGAGAGGAAGGAGGGTGTTGATGGTGAATCGCCACAAAGGTGTAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGAACGTGCAGCTAAAGCTCTGGCAGAAAAAAACATGCGTGATCTTCTTGCACAAAGAGAGCAAGCTGAGAGAAATGTAATACTCTTTACAACATGCGAGGTTACATTTTTGGAAGTTCTCATTTTTTTTTTAATTTGTGACAAATCAAGGACTCTATGCTATTTGCAGAGATTGGCTGACACATTGGATGCTGATGTTAGGAGATGGTCAAGTGGGAAGGAAGGAAAATTGCGCGCCTTGCTTTCTACATTGCAATATATCCTTGGACCTGATAGTGGTTGGCAGCCAATTCCCTTGACGGAAGTTATAACTGCCGCTGCTGTAAAGAAAGCTTACAGGAAAGCCACTCTGTGTGTTCATCCGGACAAATTACAACAAAGAGGTGCAAGTATTCAGCAAAAGTATATATGTGAGAAGGTCTTTGATCTACTAAAGGAAGCTTGGAACAAATTCAACTCCGAAGAGCGGTAG 4455 42.72 MDNLSHSRLPNRGSTSLSKKICNGGHGGHGGHGAGHFAAQTIYDDVYGGPPKFGVSALSPRFEDYGEIFGSFHALRASSIPILDLPAVDESEVFFDARSSAFDYAEVFGGFDGLDFAISYEELVSPSRRVDNASSDEAWTPAGTESLSDCSDHSGNSRCMSNGDSNQSCDGSTEFCISYSKVNSENIGHISNGKIHVTQLEMLPGHSYLVDEANPSPKGTDGDPSLPTNDDNYLNIDFDTGKVKGKHPRNTRPHPRNTRPPPVDGNGSGPLLEDNLVSQNGYGRGVCRSHEDFISVSEISLRTEPSQVPPPSRPPPKFATKKGDSTKMTLSCGEAASEIIPDDRTLPLFHVEVDASSSAAVSAAAMKGAMEKALAQLQNAKDLWERKKEGVHGRMRPDAKSDMREKEGNLTKIPNRFESLADESVQIIGEIHDNGMNFPAREERQKDVRATEVCSTHYGGEELLTAAERTVPIRSGSRFLVSDNYDCCSEWKDATGFFELARADISRKEFESMNNDAVPNILAGQIRVETINKAWENDKDQDKRGKPFHTFHVLNEEVKNLENMVHGKEEDKIKLKPNKNETRQKEQVKLKIHQDVCDLDANDRKFGVAQEFVEVKRQISDASELEKHEKPIEFRQLDSGLKVEQPISPRDIEQEKKKVVKRKENGNILKEPLIENEKREMFIEASEREKLEQKMRMFLEQQKTKKRLDLVLEDDNFKEQMIRERQLEGVHEMDDHGKKGKETAKVGVSERPELAHEREDDDKWAQDFPYREVCQKGVDDSFQMLNIEGMPRDAGKCEVTQMLVKEFQDSAHLKGISLEHDELERLEDRHKGNTTIRSQVYVEMNDLGISAAAIKMNDDKNHLPTGLACSTGMYEKFSHVDEGEETTTAVTVNETSSGSGGAENLELKKNACVSSAYQAEVEHKKVPVEMEDANIQLSFNEWTKRTVEETSFQPKLGHTEAEPTNSEDELSSEKSTSMDEGKNETEECVVKMEDMKTSLPLDKNDEKAGQADVCMEEFLGRKKFVNRMGSDPEHPESNLFCCLEDKVKSSDQVEDKRQKVSVQWFNVRAEKGSELESSRPNISERTQKSGEFMRGVNVNPATERKEKIINQSLTSKGKESERARSEAEFENDSLQKSEEEREREKEREKDRMPIDRIALEPRDRVGAETREKAERAALERMTAEARQRALTEARERLEKACAEARENSLAGKATMEARVKAERAAVERATAEARERAAEKVMSDKTSFGVRERMERSVSDKFSASNINIEMRQKSSSSGQPSLQSQSFGSSIASRYAYYSAYDERKEGVDGESPQRCKARLERHQRTAERAAKALAEKNMRDLLAQREQAERNVILFTTCEVTFLEVLIFFLICDKSRTLCYLQRLADTLDADVRRWSSGKEGKLRALLSTLQYILGPDSGWQPIPLTEVITAAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 1484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5988162 5994390 - Carg00633-RA Car03g00673 144725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00673 1484 MobiDBLite consensus disorder prediction 301 327 - -
Car03g00673 1484 Coils Coil 1212 1232 - -
Car03g00673 1484 ProSiteProfiles dnaJ domain profile. 1420 1484 IPR001623 -
Car03g00673 1484 MobiDBLite consensus disorder prediction 1079 1093 - -
Car03g00673 1484 MobiDBLite consensus disorder prediction 132 168 - -
Car03g00673 1484 MobiDBLite consensus disorder prediction 732 761 - -
Car03g00673 1484 Coils Coil 1120 1151 - -
Car03g00673 1484 MobiDBLite consensus disorder prediction 1109 1152 - -
Car03g00673 1484 Coils Coil 363 387 - -
Car03g00673 1484 Coils Coil 1180 1207 - -
Car03g00673 1484 MobiDBLite consensus disorder prediction 950 985 - -
Car03g00673 1484 Coils Coil 1318 1353 - -
Car03g00673 1484 MobiDBLite consensus disorder prediction 1263 1286 - -
Car03g00673 1484 MobiDBLite consensus disorder prediction 1070 1152 - -
Car03g00673 1484 MobiDBLite consensus disorder prediction 961 985 - -
Car03g00673 1484 MobiDBLite consensus disorder prediction 221 235 - -
Car03g00673 1484 Coils Coil 551 571 - -
Car03g00673 1484 MobiDBLite consensus disorder prediction 209 277 - -
Car03g00673 1484 Coils Coil 674 694 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00673 - - - bhj:120074172 2158.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00673 Car07g00420 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00673 Car-Chr3:5988162 Car07g01223 Car-Chr7:7504513 1.60E-52 dispersed
Car01g01499 Car-Chr1:12713617 Car03g00673 Car-Chr3:5988162 2.37E-28 wgd
Car03g00673 Car-Chr3:5988162 Car07g00420 Car-Chr7:2136421 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00673 Car_Chr03 FPKM 0.769841 1.488806 1.480465 0.479032 0.514993 0.756894 1.666885 0.0 0.086564 0.0