Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00680 GTTGTGGATGGTGGAGTAGCAGCAAATGAGAAATGGAGCTGGGGTACAGAGTTCCTATTTCCTAGTCTTCTCCTCTTATCTCCACTTGATCCGATCTCCCACAAAAGACTGCTGCCTAATCATCCACTTCTTCTAATAACAGCTGCCGATAGAAGAAGAAAAGATCACACCGTACCCCAGCTCCATTTCTCATTTGCTGCTACTCCGCCATCCACAACCTGCAGCAGATCAATCTCAAGAACATCAGTTCAAGGTGCAATGGACAATAGTATTCCTTTATCGGTAATTCGATACCGAGAATGTCTGAAGAATCACGCAGCAAGTACTGGAGGCTACGTTCTAGACGGCTGCGGCGAGTTCATGCCAAATGGAGAAGATGGAACGCCTGAGGCCTCTAAGTGTGCAGCATGTGAATGCCATCGGAACTTTCACCGAAAAGAGATGAGAGACGAGCCGCTCTCACAGCAAGCTTTACTCGGTGCTTTCTTCATCTCCAACTCGGTCAGAAACAATGGCCATCGCAGTGATGGGACGCCAGTTCCACTCTCTCGTCACCATCATTTACCGGCAGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCCAGTGAGGGCCTGAATATGTATTATCCGTCTGATAATGGAGCCCGGGAGCTGTTCTGTCAGCAGACACAACTGATGAAGAAACGATTCAGGACAAAGTTCACACAGGAACAGAAGGAGAAGATGGTAGAATTTGCTGAAAGGTTGGGGTGGAAGATTCAGAAACATGATGAACTAGAAATGCAGCAGTTCTGCGATGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAAAAAACAAGCCATGAAGAAGAAACAC 903 47.29 VVDGGVAANEKWSWGTEFLFPSLLLLSPLDPISHKRLLPNHPLLLITAADRRRKDHTVPQLHFSFAATPPSTTCSRSISRTSVQGAMDNSIPLSVIRYRECLKNHAASTGGYVLDGCGEFMPNGEDGTPEASKCAACECHRNFHRKEMRDEPLSQQALLGAFFISNSVRNNGHRSDGTPVPLSRHHHLPAVPISSMMMAFGGGSNGAPDESSSEGLNMYYPSDNGARELFCQQTQLMKKRFRTKFTQEQKEKMVEFAERLGWKIQKHDELEMQQFCDEVGVRRQVFKVWMHNKKQAMKKKH 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6018644 6020013 - Carg00640-RA Car03g00680 144732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00680 301 Pfam ZF-HD protein dimerisation region 96 148 IPR006456 -
Car03g00680 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 98 147 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00680 - - - cmos:111453071 452.981
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00680 Car07g00426 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00680 Car-Chr3:6018644 Car05g00476 Car-Chr5:2706441 1.02E-56 dispersed
Car12g00442 Car-Chr12:2802897 Car03g00680 Car-Chr3:6018644 1.63E-65 wgd
Car16g00657 Car-Chr16:4167959 Car03g00680 Car-Chr3:6018644 8.84E-33 wgd
Car03g00680 Car-Chr3:6018644 Car05g00207 Car-Chr5:1077208 1.21E-60 wgd
Car03g00680 Car-Chr3:6018644 Car07g00426 Car-Chr7:2171365 3.53E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3137 PF04770 ZF-HD_dimer 6.30E-29 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00680 Car_Chr03 FPKM 1.866337 2.879156 0.907537 1.040966 13.010503 10.795073 12.757447 0.0 0.128394 0.0