Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00706 ATGGCTAATTCCCTGCCTTTACCTGAACTCGTTTTCATCTCACCGAAGCGCCTTCTATCTTCTTCCAGTCCCAGTTCTTCTCTCAATAGGATTCCTTTTTCTAGAAGTTGTAGGCTTAGTGTTCTTCTTCGCACGAAGGTCCGGGCTGTCAGAGAAAACGGTGTGGTTGCTGAAGGGAGAGAGAATCAGCTGAGCAAGGAAGTTAATGGATATGGACTTGGAAGTAACGGAGCTGCTTACAGTTCGAATGGTAGTTACAGGGATAATGGTTGGGTTAATGGCGGAGTTACGGTTGTGGAGAGTGAGAGTGGTGGAAGCAATGGGAGATTGGTGAAGTATGTTAATGGAAATGGTGTTGCTGCGACGGTGGTGGGGGAAATTCAAGCTTCGAAGTCGATGGAGGAGGGGAGGAAGAAGAGGATAGAGGAGATTGGTAAAGAAGAGGCTTGGTTTAAGAGGAGTGACCAGCAACAGGTCGAGGTTTCTGTGGCGCCCGGTGGACGCTGGAATAGATTTAAAACATATTCCACAATTCAGAGAACCTTGGAGATATGGGGATTTGTTTTTACTTTTATCATTAAGGCTTGGCTTAACAATCAGAAATTTACTTATCGAGGAGGAATGACAGAAGAGAAGAAGGTTGCAAGAAGAAAGATCCAAGCTAAGTGGTTGAAAGAAAACATTTTAAGATTAGGTCCAACGTTTATTAAAATTGGCCAGCAATTTTCCACAAGAGTGGACATTCTACCACAAGAATATGTTGACCAGTTGTCAGAGCTTCAGGTTCATCGTGCAAGATTGAAGGGGCAGGAGGTTGTGGTGAAAGTGCAAAGGCCAAGTCTAAAGGAACTCTTTGATATTGATCTTAAGAACCTAAGGGTCATAGCAGAATACCTTCAGAAAATTGACCCAAAGTCAGATGGTGCAAAGAGAGACTGGGTTGCTATATATGATGAGTGTGCTAATGTCCTGTATCAGGAGATAGACTACACCAAGGAAGCAGCTAATGCTGAGCGGTTTGCAAGCAACTTTAAAAACTTGGACTATGTGAAAGTCCCATCAATATTATGGGACTATACTACCCCACAGGTTCTGACTATGGAGTATGTTCCTGGAATTAAAATAAATAAAATTAAAGCTCTGGATCAACTAGGCATTGATCGAAAACGGTTAGGTCGTTATGCCGTTGAATCTTACCTGGAGCAAATTCTGTCTCATGGATTCTTCCATGCAGATCCTCATCCTGGGAATATTGCTGTCGATGACGTCAATGGAGGAAGGTTGATCTTTTATGATTTTGGAATGATGGGAAGTATCAGTTCAAATATCAGAGAGGGTTTGTTGGAAACGTTCTATGGAGTGTATGAGAAAGATCCAGACAGGGTTCTTCAAGCAATGGTTCAAATGGGAGTTCTTGTGCCTACTGGAGATATGACGGCTGTTAAACGAACAGCTCAATTCTTCCTCAACAGCTTTGAAGAACGTCTGGCTGCACAGAGAAGGGAGAGAGAGATGGCAACCGCAGAGCTTGGTTTTAAGAAACCATTGACAAAGGAGGAAAAGTTAATGAAAAAAAAGGAACGCCTAGCTGCAATTGGGGAAGATCTATTAGCCATTTCAGCAGATCAACCATTTCGGTTTCCTGCTACATTCACATTTGTTGTTAGAGCATTTTCAGTACTAGATGGCATTGGGAAGGGCCTTGACCCACGATTTGATATTACTGAAATTGCCAAACCATATGCTCTGGAATTATTGAAGTTTCGGGAAGCCGGAATTGAAGTTGCCTTGAAGGATTTCAGAAAGAGATGGGACAGGCAGGCTCGTGCATTCTATAATTTATTTAGACAGGCCGAAAGAGTTGAAAAACTTGCTGAAATTATCCAAAGACTGGAGAAAGGTGATCTGAAGCTTAGAGTTCGGGCTTTGGAATCTGAAAGAGCGTTCCAACGTGTTGCAACAGTTCAGAAGACGCTAGGAAATGCTATAGCTGCTGGAAGTCTAATCAACCTTGCAACAATATTATATATCAATTCGATTCGGACGCCTGCCACTATTGCGTACATCTTTTGTGCCTTTTTCGGGTTTCAAGTGCTCTTCGGTCTTATCAAGGTCAAAAGATTAGATGAACGGGAGAGGTTGATAACAGGGACGGCTTGA 2160 42.78 MANSLPLPELVFISPKRLLSSSSPSSSLNRIPFSRSCRLSVLLRTKVRAVRENGVVAEGRENQLSKEVNGYGLGSNGAAYSSNGSYRDNGWVNGGVTVVESESGGSNGRLVKYVNGNGVAATVVGEIQASKSMEEGRKKRIEEIGKEEAWFKRSDQQQVEVSVAPGGRWNRFKTYSTIQRTLEIWGFVFTFIIKAWLNNQKFTYRGGMTEEKKVARRKIQAKWLKENILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQVHRARLKGQEVVVKVQRPSLKELFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECANVLYQEIDYTKEAANAERFASNFKNLDYVKVPSILWDYTTPQVLTMEYVPGIKINKIKALDQLGIDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISSNIREGLLETFYGVYEKDPDRVLQAMVQMGVLVPTGDMTAVKRTAQFFLNSFEERLAAQRREREMATAELGFKKPLTKEEKLMKKKERLAAIGEDLLAISADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLKFREAGIEVALKDFRKRWDRQARAFYNLFRQAERVEKLAEIIQRLEKGDLKLRVRALESERAFQRVATVQKTLGNAIAAGSLINLATILYINSIRTPATIAYIFCAFFGFQVLFGLIKVKRLDERERLITGTA 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6152679 6161121 + Carg00666-RA Car03g00706 144758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00706 719 Pfam ABC1 atypical kinase-like domain 261 465 IPR004147 -
Car03g00706 719 Coils Coil 489 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00706 - - - csv:101215926 1238.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00706 Car07g00447 CST
Car03g00706 Car07g00729 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00706 Car-Chr3:6152679 Car07g00637 Car-Chr7:3230388 1.52E-161 dispersed
Car07g00447 Car-Chr7:2276322 Car03g00706 Car-Chr3:6152679 9.14E-85 transposed
Car20g00735 Car-Chr20:4309622 Car03g00706 Car-Chr3:6152679 1.18E-27 transposed
Car03g00706 Car-Chr3:6152679 Car07g00446 Car-Chr7:2269673 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g897 . . Bda04g00312 . . . Bma09g00337 . . . . Cma07g00742 Car03g00706 Car07g00729 . . . . . . . . . . . . . . . . . . . Cone10ag0558 . Lsi01g01041 . . . . . . . . Bpe06g00240 . . . . Cmo07g00763 . . . . . . . . . . . . . . . . . . . . . . Chy02g00959 .
Vvi7g1137 . . . . . . . . . Cmo07g00508 . . . . Sed14g1089 Cpe19g00791 . Bhi03g01256 Tan03g1945 Cmetu10g0647 . Hepe04g1480 . . . . . . . . . . . . . . . . Cme08g00817 . . Bda11g01879 Bda14g01020 . . . . . . . Cma03g00776 . Car03g00706 Car07g00447 Cpe10g00587 . . . . . . . . . . . . . . . . . Chy02g00677 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005789 3 1 2 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00706 Car_Chr03 FPKM 0.0 0.0 0.193404 0.0 0.0 0.157367 0.0 0.254956 0.0 0.0