Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g00727 | ATGGCTGCAGCTATAGATGTTTATACTGGAATTTCAACGCAGGTTTACTCTTCGGATCCTTTTAGCGAGGAATTAATGAAGGCACTTCAACCTTTTATGAAAAGTGCTGTTTCATCCTCCTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTTTCTTCTTCTGTTTCTTGTCAGCCAAGATTAAGCACTGATGTTTGCTCCTCGTCGAGCACCTGCTTGTTTTCTCAAGGCTTCTCGGGAATTGAGAAGATGGGTCTTGAGCAATCAGGTCCAATCGGCCTAAACAATCTCACCCCTTCTCAGATATGCCAAATTCAAGCTCAAATCCAGCTACCCCCACAAACCATGTCTTCCCTCTCTTCTTCTTCTTCTTCTTTCCAGTCTCAATATTGTAACTTCCTTGCCCCCAAATCCATCCCCATGAAGCTCATTGGCTCTCCATCTAAGCCCACTAAACTGTACAGGGGAGTCCGGCAGCGGCACTGGGGAAAATGGGTGGCAGAAATCAGACTCCCAAAGAACCGAACCAGGCTGTGGCTTGGGACCTTCGACACGTCCGAGGAGGCTGCTTTAGCCTATGACAAAGCTGCTTACAAGCTCCGTGGGGAGTTTGCCAGGCTCAATTTCCCACATCTCAAACACCAATTCGGAGAATTCAAACCTCTTCACCCTTCTGTGGACGCGAAACTTCAAGCAATTTGTGAGAGCTTGAAACAGGGGAAAACAGAGAAGCTCTGTTCTGCTGAGGATGAAAAGGCAAACACCAGTCCACCTCCATCGGAGTCAAACTTAGTGGTTGACAATTATTGGGAACCGGAATTGAAAAGCGAAGTGGAGACCTCATCCTCATCCTCATCCTCGTTCTCATCCTCATCTCCTTCACGGTCTGAAGAATTGTCCACCGGATCATCCCCTGAATCAAGTATTAGCTTCTTGGATTTTTCAGATTCCCAATGGGGTGAAGGAGAAGCATTTTGTTTGGAGAAGTTTCCTTCTGTGGAAATTGACTGGGCAGCTCTGAGTCAAATGGTGGAATCGGAGTGTTAA | 1050 | 46.29 | MAAAIDVYTGISTQVYSSDPFSEELMKALQPFMKSAVSSSYSSSSSSSSSSVSSSVSCQPRLSTDVCSSSSTCLFSQGFSGIEKMGLEQSGPIGLNNLTPSQICQIQAQIQLPPQTMSSLSSSSSSFQSQYCNFLAPKSIPMKLIGSPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTSEEAALAYDKAAYKLRGEFARLNFPHLKHQFGEFKPLHPSVDAKLQAICESLKQGKTEKLCSAEDEKANTSPPPSESNLVVDNYWEPELKSEVETSSSSSSSFSSSSPSRSEELSTGSSPESSISFLDFSDSQWGEGEAFCLEKFPSVEIDWAALSQMVESEC | 349 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6265098 | 6266147 | + | Carg00687-RA | Car03g00727 | 144779 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g00727 | 349 | Pfam | AP2 domain | 155 | 204 | IPR001471 | GO:0003700|GO:0006355 | |
| Car03g00727 | 349 | MobiDBLite | consensus disorder prediction | 278 | 310 | - | - | |
| Car03g00727 | 349 | ProSiteProfiles | AP2/ERF domain profile. | 154 | 211 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g00727 | Car-Chr3:6265098 | Car09g00582 | Car-Chr9:3296296 | 5.91E-80 | dispersed | |
| Car15g01151 | Car-Chr15:9048177 | Car03g00727 | Car-Chr3:6265098 | 1.21E-35 | dispersed | |
| Car16g00491 | Car-Chr16:3147111 | Car03g00727 | Car-Chr3:6265098 | 1.70E-38 | dispersed | |
| Car17g00086 | Car-Chr17:500173 | Car03g00727 | Car-Chr3:6265098 | 5.03E-35 | transposed | |
| Car12g00137 | Car-Chr12:789433 | Car03g00727 | Car-Chr3:6265098 | 1.96E-76 | wgd | |
| Car03g00727 | Car-Chr3:6265098 | Car05g00437 | Car-Chr5:2506940 | 6.76E-87 | wgd | |
| Car03g00727 | Car-Chr3:6265098 | Car07g00472 | Car-Chr7:2377497 | 1.36E-152 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3142 | PF00847 | AP2 | 3.60E-15 | CL0081 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g00727 | K09286 | - | csv:101211347 | 491.115 |