Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00740 ATGGAATTTTCCGGCGATCCACTTCCGATGAGTATGATCGGAAACGGTGGCCCGCTGGTTCCGTTGCAAAACCTCTCGAAGATCCGTTCCAGAATGGATGCCGTCCAAATATTCCTATCAGATAACATCGACAGAGAAGTTCGTATTAGCAATCGGCAGATGGATGCCGTTTCATCTGAAATCGCCACTGCAATCCAACAGATCATCGTCAACGGCGCCGCTCTTCTAACCTGCGCCCGAGAGGAAACCCCGAGTACGCTGGATTTGACGGCTTTGACGACTCTAACTCATCCGAATCCTGTAGCAGAGAAATCAATGGCGGAGCTGAAGGTCGAGGGAGATGAATTCGAGCCGGATAGGGAAATAGTTGAGTTGGATGCGATGGAATTGCTAGCGGAGCACATCCATTTCTGCGAAATCTGCGGGAAAGGGTTCAAGCGCGACGCGAATTTGCGGATGCATATGCGTGCCCATGGAAATCAATTCAAGACCCCAGAGGCGTTGGCGAAGCCGTTGGATATTGTTGGTGCGAACGGCAGGGCGAAGCAGAGTCGATTTTCTTGCCCTTACGACGGTTGTCCGAGAAACAAAATGCACAAGAAGTTTAGAGCACTGAAGTCGTTGATTTGCGTAAAAAATCACTTCAAACGGAGCCACTGCCCCAAGATGTTCTCCTGCAATCGTTGCAACAAGAAGAGTTTCTCTGTTATGGCCGACTTGAAGAGCCACTTGAAGCACTGCGGTGAGTCCAAGTGGCGGTGTTCGTGTGGAACCACCTTCTCCCGTAAGGACAAGTTGTTTGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCAGTCGCGGATGACGACGATGGAAAGGGGAAAACATCCGTCACGGCGGCAACGCCGGAGACGGATGAAGATGGGGACTCTAATCGAATTTCGAAGGATGTTAATTTCCCAAACGCGTGGAATGGTTCGGATGATGGATGTTTCGAATCATTTCTGGATGGGTTTGGTTCCATTGAGAATCACTGTTTGCAAGAGGTGCTGGGACTCCCATGTAATTTCGATTCGGAATCGGAATGGAAAATTTGTGGTCAGATGTCTGTCTCTTTGGAAGCTCTGGCAATGGCCGGGATGGACTCCGGCGAGTGGGGCATAGATGTTGAGGAATGGGAAACCCAAGACTTGGACCGCTGCCCTCCCCCGTATCTCCTCGCCGAAGAACGAGATGACGATGAAGCTTCAGAACAACCAAGTCGTTCTGAGCCACCGTCGCAGAGTCGCCGGCGATCATGA 1284 51.25 MEFSGDPLPMSMIGNGGPLVPLQNLSKIRSRMDAVQIFLSDNIDREVRISNRQMDAVSSEIATAIQQIIVNGAALLTCAREETPSTLDLTALTTLTHPNPVAEKSMAELKVEGDEFEPDREIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDIVGANGRAKQSRFSCPYDGCPRNKMHKKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVADDDDGKGKTSVTAATPETDEDGDSNRISKDVNFPNAWNGSDDGCFESFLDGFGSIENHCLQEVLGLPCNFDSESEWKICGQMSVSLEALAMAGMDSGEWGIDVEEWETQDLDRCPPPYLLAEERDDDEASEQPSRSEPPSQSRRRS 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6314253 6316183 + Carg00700-RA Car03g00740 144792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00740 427 MobiDBLite consensus disorder prediction 393 427 - -
Car03g00740 427 ProSitePatterns Zinc finger C2H2 type domain signature. 138 158 IPR013087 -
Car03g00740 427 Pfam Zinc finger, C2H2 type 137 158 IPR013087 -
Car03g00740 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 163 IPR013087 -
Car03g00740 427 MobiDBLite consensus disorder prediction 282 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00740 Car-Chr3:6314253 Car12g00907 Car-Chr12:9003008 7.48E-73 dispersed
Car16g00730 Car-Chr16:4634976 Car03g00740 Car-Chr3:6314253 6.04E-13 dispersed
Car16g00729 Car-Chr16:4631784 Car03g00740 Car-Chr3:6314253 3.92E-12 wgd
Car03g00740 Car-Chr3:6314253 Car07g00486 Car-Chr7:2426305 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3144 PF00096 zf-C2H2 0.00018 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00740 - - cmax:111496804 595.119