Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g00762 | ATGGCGGATACTTTTTACTGTACACAGAAAAACGCCAATACTTGTTTTGATGATCAATTTGATTGTAATGCCATAAATAATAAGGTTGAGCAATGCTCAATTTTTCTGCGCCATACTTTGATGGGTTTTGCTTTACAGAGTGAAGAGAGGGTGAGAGGAATGGTGGAAAAAGAGATTGAGCATTTGCCCAGCCATGATTATCTTAAGAGACTGCGCAGTGGGGATTTGGATTTGAAGTTTAGGAGAGAAGCTCTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTCACTCTTTGTCTATCTTTAAACTACTTGGACCGTTTCCTCTCAGTGTATCACTTGCCTATGGATAAAAGCTGGACTGTGCAGCTGCTGTCAGTTGCTTGTGTGTCTCTAGCAGCAAAGATGGAGGAGACAGAAGTACCACTGTCCATAGATTTACAGGTGGAGGAGCCTAAGTTTGTGTTCGAAGCAAAAACCATACAAAGAATGGAGCTTCTGGTTCTAAGCAGGTTGAAATGGAAGATGCATGCCATAACTCCATTTTCTTTCATTGATTATTTCCTGAGTAAGATGAGTGTTGGAGAGCACGTATCGAGGGTATCCTTGTCAAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCTTCTGAAATTGCTTTAGCTGTGGCAATTTCCACTTCAGGAGAATTGCAAGCATCCGACGTCAATAAAGCAATCCTTTCTTTCCCATATATGGAGAAAGAGAGGGTGATGAAGTGCATCGATCTGATCAGAGATGTATCGTTGATTAGTAATGTAAATACATTGGTTGCTGATAATGTTGCTGGTTCAGTTCCTCAAAGCCCTGTTGGGGTGTTGGATGCAGCTTGTTTGAGCCAAAAACAGAAGAACTATTAA | 936 | 41.24 | MADTFYCTQKNANTCFDDQFDCNAINNKVEQCSIFLRHTLMGFALQSEERVRGMVEKEIEHLPSHDYLKRLRSGDLDLKFRREALDWIWKAHAHYSFGPLTLCLSLNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLSIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMHAITPFSFIDYFLSKMSVGEHVSRVSLSKSSQLILSTIKGIDFLEFRPSEIALAVAISTSGELQASDVNKAILSFPYMEKERVMKCIDLIRDVSLISNVNTLVADNVAGSVPQSPVGVLDAACLSQKQKNY | 311 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6407386 | 6408916 | - | Carg00722-RA | Car03g00762 | 144814 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g00762 | 311 | Pfam | Cyclin, C-terminal domain | 183 | 276 | IPR004367 | - | |
| Car03g00762 | 311 | Pfam | Cyclin, N-terminal domain | 54 | 180 | IPR006671 | - | |
| Car03g00762 | 311 | ProSitePatterns | Cyclins signature. | 81 | 112 | IPR006671 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g00113 | Car-Chr2:691685 | Car03g00762 | Car-Chr3:6407386 | 3.65E-42 | dispersed | |
| Car03g00762 | Car-Chr3:6407386 | Car16g00277 | Car-Chr16:1723405 | 3.14E-61 | dispersed | |
| Car11g01112 | Car-Chr11:8836464 | Car03g00762 | Car-Chr3:6407386 | 7.25E-50 | dispersed | |
| Car20g00506 | Car-Chr20:2795863 | Car03g00762 | Car-Chr3:6407386 | 6.14E-38 | dispersed | |
| Car12g00196 | Car-Chr12:1241291 | Car03g00762 | Car-Chr3:6407386 | 8.12E-88 | wgd | |
| Car03g00762 | Car-Chr3:6407386 | Car05g00478 | Car-Chr5:2720856 | 7.52E-86 | wgd | |
| Car03g00762 | Car-Chr3:6407386 | Car07g00501 | Car-Chr7:2508069 | 3.09E-159 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g00762 | K18810 | - | csv:101209378 | 459.529 |