Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00775 ATGGGTACTCAAAGTCCAACAGGATTGGTTCCACACAAGAAGATGCTTCCTCCTCAACCGGGAAGATTTGATGATCGTGAAGATCTCATTAAATATGTTCGCGACTTTGGTGCTGATCAGGGATATGTGGTAACAATTAAGAAGTCTAGGAAAGATAGAAGGGTCATCCTTGGTTGTGATAGAGGAGGTCTGTACCGTAACAGGCGTAAGATTGACGAGAGTCGGCGCAAAAGGAAAGCTAGCTCACGCTTGATAAATTGCCCATTTGAAGCAATTGGCAAGAAGGAAGATGATGCCTGGATGCTTACAATTAGAAATGGGGACCATAACCACGAGCCCTTAAAAGACATGTCAGAGCATCCTTACAGTCGCCGTTTTACTGAGGATGAAGTAAGGCAAATAAAACTGATGACTGAAGCTGGTATAAAACCACGCCAAGTGCTTAAAGCTCTCAAACAACATAATCCAGATTTGCAGTCAACACCAAGGCATTTGTACAACCTCAAAGCCAAAATTCGCCAAGGAAATCTATCAGAAAAGAATTGCAAGTCATGGAGACCTAATATTTCACTTCATGCAAATAGTAGTCATACAGTTATCGGGGATACGGTCAAGCAAACGCATCAGCTGAAGGTTCCTAATTTAATTGGAGGGGAGTTCTTGGATTCGCACAACTGTCCAGTGGTTGATGTTATCAATCCAGCAACACAAGAAGTTGTTTCTCATGTTCCTTTAACAACCTATGAAGAGTTTAAGGCCGCAGTTAATGCAGCCAAACAAGCCTTTCCCTCATGGAAAAACACACCGATTTCTACTCGTCAATGTGTTATGTTTAAGTTCCAGGAGCTCATCCTCAGAGACATGGATAAGCTTGTGACGAATATTGTCACAGAACAGGGAAAAACATTAAAGGATGCTCAAAATGATATCATCTGTGGTTTAGAGGTGGTTAAACATGTTTGTGGATTGGCCACTATGCAAATGGGGGAGTTCGTACCTAATGCATCTGATGGAATTGACTCGTATTGCATCCGAGATCCAATAGGTGTTTGCGCTGGGATCTGCTCTTTTAACCATCCAGCAACAGTTTCCTTATGGATGTTTCCGGTTGCAGTTACATGTGGCAATACATTTGTTCTTAAGCCATGTGAAACATACCCGGGGGCTTCAATGTTGCTAGCTGCATTAGCAGTGGAGGCTGGCTTGCCTGATGGCGTTCTAAATATTGTTCATGGAACCCATGATATCATAAACTATATATGTGACGATGAGGACATAAAAGCCATATCTTTTGCCAGTTCATGTTCTGCTGGAAAGAACATATATGCTAGGGCTGCTGCTACGGGAAAGCAAGTTCAGTCCCACTTCGGAGGCAAGAGCCATGCAATTATTATGCCTGATGCTAACATGGAGGCTACTTTAAATGCTCTGGTTGATGCTGGATTCGGTACTTCTGGACAGACATGTATGGCTATCAACATTGTTGTCTCCGTTGGGAGTTCAATTCTATGGGATCCGTTTACTCCACAGAAAAAAAAACTTGTGGAATGTGCCAAAGCACTTAAAGTGAATGTGGGGACAGATCCCAATGCTGACCTTGGTCCTGTAATTACCAAAGAGGTGAAAGATCGTTTTTGTAGATTAGTTCAAAGTGGCATTGAAGATGGTGCTAGACTTCTGCTTGACGGTAGAGATATTGTGGTCCCAGGATATGAAAATGGAAATTTTGTTGGTCCAACCATTTTATCTGATGTAACAACGGACATGGAGTGCTACAAGCATTCTGGTACATTAATTTTAACAGCAATATTTTGTGTCGTCAGGAAGAATTTCTTGGACCAGTTCTCCTTTGTATGCAGGTACTACCCAGCTGACAACCTAGAGGAGGCTATATCCATTTACTTTCGTTTGAATCTTGATGTTGGTTGTAGCTTCTTGAAGCTGCTTTCCTTGAAGAAGAACCGAAACGGAGCTTCCATATTCACAACTTCTGGCATTTATGCGAGGAAATTTCAGAGTGAAGTGGAAGTGGGAATGGTTGGTATCAATGTTGCTGTTACAGTTCCGTTGCCATCTTCCTTTAATGATAAGGCAGGCCTGGAATTTTACACCAAATTGAAAATAGTGGCTCAGCAGTGGAAGAACTCAGCAAGCATTGGAGTCTCAATGACGGCGTCTTCACCATCTGAGAGACATTTGAGATCCCGTACTGTACCTTCCACGTTAGTTTCAACATCTGATAAAGATTCACCTGGTGGGCGGCACCGAAGTTTACCCCCGTTGCCTTCCACATCTGAGAGGGATTCACCTAGCGATGCTGTATTGCTGCCAGACCCTCGAATATCTCAGACAGATTTAGCCAATGAAAGAGCCACCTCCTCTCCGCCGACTCCTGATAGGGATTTGCACGGTCAGGGACTGTCCCTGATTTCTACCTTGTCATCAGAGGGGGACATATCCAACCAAGAGTTGTCTCCTGCTATGCTTTTAACAGGTGATAGAGAATTGCCTGGCCAAGCTATGTCAGTGTCAACATCCCGATCATCTGAGAGAATGTACTTATCTCAGAAATGTCATTGGAGCGAACCCCTGAGGGCCGATTCAATTCCATCCAGTTCTGAGAGGATCAAAGGGCAGGCATCTCGAACTACTACTCCTGCTTTGGTTTTAGCAGCAGAGGGGTTCTACGTGCCTACATCTCATGACAGTAATTGTCTGATTACCCATGGAAGTGACAGTACAGTTCCATCTCGAAGAATCGACAGCATGTGTCAATCATCAGAAAGAGTATACATGCTGGCAGCTTCCCATCTGAACGACAGTATGAGTCAAACATTGCGGAGAACTGATTCGCCCTTATTTTCTTCTTCTGATGGAAAAGACCACATCAGCTTGGACTCTCAAACCGACGCTGCTTTGCAATCAGATAGAATGTACTTGTCTAGCTTGTCAGAGAGGGACGGTAATATGACTTCGGCTTCTTCTCAACAAGTTGAATCTTTAACATCCACTTCAGAACGAATGTATATACCTCCATTAGGTTATAGAAATGCAGGCATTCCACCAAAATCGGAATGGTTATGCATTCCCACGCCTGCTTTATCTGAGAGAATGTATTCACAAGGGCCAATAGTGTCAGCAGATGAATTTCAAGACCAAGGAGCATCATTGACACTGCCTACATCCAAGAAATACGAACATTAG 3204 43.45 MGTQSPTGLVPHKKMLPPQPGRFDDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGLYRNRRKIDESRRKRKASSRLINCPFEAIGKKEDDAWMLTIRNGDHNHEPLKDMSEHPYSRRFTEDEVRQIKLMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSEKNCKSWRPNISLHANSSHTVIGDTVKQTHQLKVPNLIGGEFLDSHNCPVVDVINPATQEVVSHVPLTTYEEFKAAVNAAKQAFPSWKNTPISTRQCVMFKFQELILRDMDKLVTNIVTEQGKTLKDAQNDIICGLEVVKHVCGLATMQMGEFVPNASDGIDSYCIRDPIGVCAGICSFNHPATVSLWMFPVAVTCGNTFVLKPCETYPGASMLLAALAVEAGLPDGVLNIVHGTHDIINYICDDEDIKAISFASSCSAGKNIYARAAATGKQVQSHFGGKSHAIIMPDANMEATLNALVDAGFGTSGQTCMAINIVVSVGSSILWDPFTPQKKKLVECAKALKVNVGTDPNADLGPVITKEVKDRFCRLVQSGIEDGARLLLDGRDIVVPGYENGNFVGPTILSDVTTDMECYKHSGTLILTAIFCVVRKNFLDQFSFVCRYYPADNLEEAISIYFRLNLDVGCSFLKLLSLKKNRNGASIFTTSGIYARKFQSEVEVGMVGINVAVTVPLPSSFNDKAGLEFYTKLKIVAQQWKNSASIGVSMTASSPSERHLRSRTVPSTLVSTSDKDSPGGRHRSLPPLPSTSERDSPSDAVLLPDPRISQTDLANERATSSPPTPDRDLHGQGLSLISTLSSEGDISNQELSPAMLLTGDRELPGQAMSVSTSRSSERMYLSQKCHWSEPLRADSIPSSSERIKGQASRTTTPALVLAAEGFYVPTSHDSNCLITHGSDSTVPSRRIDSMCQSSERVYMLAASHLNDSMSQTLRRTDSPLFSSSDGKDHISLDSQTDAALQSDRMYLSSLSERDGNMTSASSQQVESLTSTSERMYIPPLGYRNAGIPPKSEWLCIPTPALSERMYSQGPIVSADEFQDQGASLTLPTSKKYEH 1067
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6470378 6480127 - Carg00736-RA Car03g00775 144827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00775 1067 MobiDBLite consensus disorder prediction 1045 1067 - -
Car03g00775 1067 MobiDBLite consensus disorder prediction 724 748 - -
Car03g00775 1067 Pfam Aldehyde dehydrogenase family 227 593 IPR015590 GO:0016491
Car03g00775 1067 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 482 493 IPR016160 GO:0016491
Car03g00775 1067 MobiDBLite consensus disorder prediction 1 21 - -
Car03g00775 1067 MobiDBLite consensus disorder prediction 785 799 - -
Car03g00775 1067 MobiDBLite consensus disorder prediction 984 1005 - -
Car03g00775 1067 MobiDBLite consensus disorder prediction 724 805 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00775 K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] - csv:101207178 1671.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00775 Car-Chr3:6470378 Car20g00250 Car-Chr20:1444254 2.32E-46 dispersed
Car03g00775 Car-Chr3:6470378 Car11g01168 Car-Chr11:9362078 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00477 . 6 516 Aldehyde Dehydrogenase Gene Family AT3G24503 66.7 1.3e-205 713.0
Car10g00560 . 1 457 Aldehyde Dehydrogenase Gene Family AT3G24503 65.9 4.8e-187 651.4
Car12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 9.4e-159 557.4
Car11g00103 . 68 552 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 4.1e-154 542.0
Car11g00103 . 1 552 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 3.6e-257 884.4
Car12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 9.5e-250 859.8
Car05g00003 . 1 545 Aldehyde Dehydrogenase Gene Family AT3G48000 68.0 2.6e-223 771.9
Car11g00477 . 17 516 Aldehyde Dehydrogenase Gene Family AT3G48000 51.6 8.8e-155 544.3
Car10g00560 . 18 457 Aldehyde Dehydrogenase Gene Family AT3G48000 51.6 7.3e-141 498.0
Car12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 4.8e-169 591.3
Car11g00103 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 5.8e-167 584.3
Car05g00003 . 1 389 Aldehyde Dehydrogenase Gene Family AT1G23800 66.6 2.0e-146 516.2
Car11g00477 . 17 360 Aldehyde Dehydrogenase Gene Family AT1G23800 52.3 4.0e-99 359.0
Car04g01154 . 83 543 Aldehyde Dehydrogenase Gene Family AT4G34240 62.0 1.8e-168 589.7
Car09g00694 . 14 338 Aldehyde Dehydrogenase Gene Family AT4G34240 59.6 1.3e-118 424.1
Car02g01035 . 4 185 Aldehyde Dehydrogenase Gene Family AT4G34240 50.5 3.3e-45 180.3
Car04g01154 . 144 541 Aldehyde Dehydrogenase Gene Family AT1G44170 68.1 2.5e-165 578.9
Car09g00694 . 10 338 Aldehyde Dehydrogenase Gene Family AT1G44170 64.6 7.0e-131 464.5
Car02g01034 . 1 282 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 8.4e-76 281.6
Car16g00681 . 47 524 Aldehyde Dehydrogenase Gene Family AT4G36250 61.3 3.8e-181 631.7
Car02g01034 . 1 284 Aldehyde Dehydrogenase Gene Family AT4G36250 60.9 5.6e-100 362.1
Car20g00250 . 39 551 Aldehyde Dehydrogenase Gene Family AT1G79440 75.2 3.4e-228 788.1
Car02g00487 . 2 289 Aldehyde Dehydrogenase Gene Family AT1G79440 78.5 8.7e-131 464.5
Car11g01168 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 84.6 2.7e-245 845.1
Car03g00775 . 211 714 Aldehyde Dehydrogenase Gene Family AT2G14170 59.4 1.9e-166 583.2
Car10g00142 . 35 525 Aldehyde Dehydrogenase Gene Family AT1G74920 76.2 6.5e-229 790.4
Car10g00142 . 35 525 Aldehyde Dehydrogenase Gene Family AT3G48170 76.6 2.7e-230 795.0
Car12g01124 . 39 534 Aldehyde Dehydrogenase Gene Family AT2G24270 89.9 6.1e-267 916.8
Car13g00771 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.7 3.5e-263 904.4
Car17g00339 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 7.0e-278 953.4
Car08g01144 CST 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 74.1 8.3e-271 929.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010728 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 1 3 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00775 Car_Chr03 FPKM 18.930483 20.847893 24.538027 24.361713 29.574812 27.146544 29.522142 25.324881 27.281393 23.789829