Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00778 ATGGAGAAGAGAGGCAAGGCAAGAAGGCAGCACCCATACTGGACATGGAAACTTGGGTTCTCAGCAATGCCGCTCCTTTTCTTATTCTTCAGTTTAACCCTCGCCCACAACAATTCCTCCCAACGAAGAATGGTAAGAAAGTTGGTGAAGAACAATGAATCTATGCTGTCGCGCGATGTAACGTTAGAATGGGAGAATCGTGGACAGGTAGTAATGGACAATGGGTTAGTTCGAATCACTTTATCCAGACCAGAAGGCAACGTTATTGCCCTAAAATACAATGCTCTTGATAACCTACTTGAAATTCGCAACCCACAATATAATAGAGGATATTGGGACGTGGTTTGGAACCGCCCAAATAGAGGTAGTGCCACTGACAGAGTAAGGGCGACGAATTTCAAAGTGATTACGGCCACCGCCGACCAAATAGAGCTTTCATTCACCAAAACATGGAATCCTAATTCCCACTCTTCCTGCCCTTTGAACATAGACAAAAGGTATATTCTCCGACGGGGCGATTCTGGGTTCTATGCATATGCCATATTTGAACGCCTTGATGGATGGCCTCAAATTGACGTTGATCAGATTCGAATTGTCTTCAAAATTCTAGGGAAAAAATTTCATTACATGGTGGTATCGGACGACAGGCAGAGGATCATGCCAACGGCAAGGGACCGTGAGACCGGGCATCCTCTGGCTTATCGGGAGGCGGTTCTCTTAACCCAACCCGTCAATTCTAACCTTAAAGGGGAGGTGGACGATAAGTACCAGTACTCCCTAGAGAATATGGAGAATAAGGTTCATGGATGGGAGTCGATGAACCCACACGTGGGGTTCTGGATGATCACGCCCAGTGATGAGTTCCGCACGGCGGGGCCCGTCAAGCAAGATCTTACTTCCCACGTTGGCCCCACCACCCTCTCCATGTTCGTGAGTACGCATTACGCGGGTAAAGAAGTTTCCATGAGATTTGGAGTGGGAGAGGCATGGAAGAAGGTATTCGGACCGGTCTTCATTTATCTAAACTCGGATCCGGTCGGTTCTGGAACCGGTTCACTTTGGGAAGATGCTAAAAACCAGATGAGGATAGAGACAAGTAAGTGGCCATACAGCTTTGTTGGATCCACAGATTTTCCATCCTCAAACCAAAGAGGAACCGTAAGCGGTCGGTTATTAGTCCGAGATAGACATGCTAAGAAGTGGTTGATGTGGGGCGATTCTGCGTATGTTGGCCTTGCAGCTCCCGGGGAATTGGGGTCTTGGCAAACAGAAAGCAAGGGATATCAGTTTTGGACACGGGCAGATGGGCAAGGATATTTCTCAATTAACAACATTAGGCCTGGAAACTACAATCTATACGCGTGGGTACCTGGTGTCATCGGTGATTACAAGTACGCCAATGACATCACTGTCACGTTGGGGAGTACCACCCGCCTCGGCTTACTCATATACGACCCTCCAAGACAAGGCCCAACTCTGTGGGAGATTGGCGTCCCAGACCGGACAGCCGCCGAGTTCTATATACCGGATCCCCAGCCCACCCTCATGAATCGCTTTTACAACAATTCTGATATCCATACCCCAGATAAGTTTCGACAGTACGGTCTTTGGGAGCGCTACGCCGAATTGTTTCCCCATCAAGATCTAGTCTACAACGTCGCCACCGATGACTACCGCCGACATTGGTTCTTCGCCCATGTCACCAGAGGCACCCGTTTCGGTACCTACCAAGCAACCACGTGGCAGATTGTGTTTCGTCTTCAAGGGCCCAAACAGAGCGGGAACTATACGCTTCGGTTGGCCTTGGCTTCCACTACCGAGGCGGTGGTCGAAATCCGGTTCAACAACCCGTTGGCCAGACGGGCTCATTTCTCGACCGGGTATTGGGCCTCAGGAAGGGATAACGCCATTGCTAGACATGGGATTCATGGGCTTTATTGGTTATTCAACTTCAAGGTTCCAAGTGGATATCTGGTCGAGGATGAAAACATTATCTATCTTACACAGAGACGACATATGGGACCCTTTCAAGGAGTGATGTACGATTACATACGGTTCGAAGGCGTACAATAA 2073 48.82 MEKRGKARRQHPYWTWKLGFSAMPLLFLFFSLTLAHNNSSQRRMVRKLVKNNESMLSRDVTLEWENRGQVVMDNGLVRITLSRPEGNVIALKYNALDNLLEIRNPQYNRGYWDVVWNRPNRGSATDRVRATNFKVITATADQIELSFTKTWNPNSHSSCPLNIDKRYILRRGDSGFYAYAIFERLDGWPQIDVDQIRIVFKILGKKFHYMVVSDDRQRIMPTARDRETGHPLAYREAVLLTQPVNSNLKGEVDDKYQYSLENMENKVHGWESMNPHVGFWMITPSDEFRTAGPVKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGVGEAWKKVFGPVFIYLNSDPVGSGTGSLWEDAKNQMRIETSKWPYSFVGSTDFPSSNQRGTVSGRLLVRDRHAKKWLMWGDSAYVGLAAPGELGSWQTESKGYQFWTRADGQGYFSINNIRPGNYNLYAWVPGVIGDYKYANDITVTLGSTTRLGLLIYDPPRQGPTLWEIGVPDRTAAEFYIPDPQPTLMNRFYNNSDIHTPDKFRQYGLWERYAELFPHQDLVYNVATDDYRRHWFFAHVTRGTRFGTYQATTWQIVFRLQGPKQSGNYTLRLALASTTEAVVEIRFNNPLARRAHFSTGYWASGRDNAIARHGIHGLYWLFNFKVPSGYLVEDENIIYLTQRRHMGPFQGVMYDYIRFEGVQ 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6488716 6492285 - Carg00739-RA Car03g00778 144830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00778 690 Pfam Polysaccharide lyase family 4, domain II 406 479 IPR029413 -
Car03g00778 690 Pfam Rhamnogalacturonate lyase family 49 252 IPR010325 -
Car03g00778 690 Pfam Polysaccharide lyase family 4, domain III 492 685 IPR029411 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00778 Car-Chr3:6488716 Car04g00798 Car-Chr4:4620517 0 dispersed
Car12g00194 Car-Chr12:1225621 Car03g00778 Car-Chr3:6488716 0 wgd
Car03g00778 Car-Chr3:6488716 Car07g00516 Car-Chr7:2605890 0 wgd
Car03g00778 Car-Chr3:6488716 Car09g00530 Car-Chr9:2983546 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00778 K18195 - csv:101206696 1051.58