Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00782 ATGGAGCTCAGTCAACATGGTTTCTTAGAGGAGTTATTAGCTTCCACGCCTTGGTCCTCCTCTTATTCAAATGGCTTCAATGATTTCTTCCAAAATACCTGGAATTTCGGTTGTTTTGATGAAAATCCCCAAATGGGTACCTCTATTTCCCCCCATTTTCCCGCTCTCCAAACTGCTACTGATTTTTCCTTCGCGGACCAACACCTCTACACCAATTTTATCGAAGGCTTTGCAATGCCGGAGCTCGATTCTTCATCGTACACTAGGAATAACGAAACCCCACCATTCGTTTCGCAAGAAGAAATGAGTAATAAGAATAGTGGGTTCCCTCCGGTGGGGATGGAGGAGGAAGAACTTGGGTTTATGGAGGCTGAAGCGGCTCCAAGTGTGTGCAAAGTGGAAATGGAGCAAATGGGTGGGCGTGAAACTAATGATTCCAAAATGGGTGTCGCAGAATCCAGGAAAAGAACCAGTAACAAGGCTAAGAAGATTGAAGGACAGCCCTCGAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCCATGCTCAGAGCAATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACGATCGATTATGTGAAAGAGCTGCTAGAAAGAATCAATAACTTGAAAGAAGAAGATGAATTTGGTTTAGATTCGAATCACGTGGGCTTCAATGCGATCTCCAAGGAAGGGAAGCCCAATGAAGTTCAAGTGAGAAATTCCCCAAAGTTCGATATTGAAAAGAGGGAGAGTAAGACTCGAATCGACATTTGCTGTGCGACGAGGCCAGGATTATTGCTGTCCACTGTGAACACATTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTGATTAGCTGCTTCAATGATTTCTCGATGCAAGCTTGTTGTTCAGAGCAGGGAAGCGGTGAGAAAGCAGTGGCAAGCTCAGATGATATAAAGGAGGCACTGTTCAGAAATGCAGGATATGGAGGGAAGTGCTTGTAG 1026 44.44 MELSQHGFLEELLASTPWSSSYSNGFNDFFQNTWNFGCFDENPQMGTSISPHFPALQTATDFSFADQHLYTNFIEGFAMPELDSSSYTRNNETPPFVSQEEMSNKNSGFPPVGMEEEELGFMEAEAAPSVCKVEMEQMGGRETNDSKMGVAESRKRTSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEDEFGLDSNHVGFNAISKEGKPNEVQVRNSPKFDIEKRESKTRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQACCSEQGSGEKAVASSDDIKEALFRNAGYGGKCL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6511291 6512835 + Carg00743-RA Car03g00782 144834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00782 341 MobiDBLite consensus disorder prediction 147 167 - -
Car03g00782 341 CDD ACT_UUR-ACR-like 266 307 - -
Car03g00782 341 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 341 - -
Car03g00782 341 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 3 341 - -
Car03g00782 341 SMART finulus 172 221 IPR011598 GO:0046983
Car03g00782 341 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Car03g00782 341 Gene3D - 167 232 IPR036638 GO:0046983
Car03g00782 341 Coils Coil 205 225 - -
Car03g00782 341 MobiDBLite consensus disorder prediction 138 167 - -
Car03g00782 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Car03g00782 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 228 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00782 Car-Chr3:6511291 Car04g01234 Car-Chr4:7104038 3.69E-76 dispersed
Car12g00162 Car-Chr12:929971 Car03g00782 Car-Chr3:6511291 1.85E-76 wgd
Car03g00782 Car-Chr3:6511291 Car05g00509 Car-Chr5:2951105 3.92E-85 wgd
Car03g00782 Car-Chr3:6511291 Car07g00521 Car-Chr7:2631738 4.34E-180 wgd
Car03g00782 Car-Chr3:6511291 Car09g00538 Car-Chr9:3044325 1.52E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3150 PF00010 HLH 1.90E-09 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00782 - - csv:101205974 582.022