Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g00800 | ATGGGTTTTGATGATCTTTCTAATACAGGCCTTCTACTGGGTTTGGGATTACCGCTTCCCTCCAATCCCGCTCTTCTTTCTCACAAACCCAAGAAGCCAGTAGATTTATTCTCTTTTCCCGCCCCCGAATCCGAGCCCTCCTTGACTTTGGGCCTTTCCACACCCGAGACTTACCCGCTACCTGCCCCTGAAACGGCTGATTTATGTCGTCAACCCTCGCCTCACAGTGCGATTTCTTCCTTCTCCGGCGGCAGGGTGAAGCGTGAAAGAGATGTTTCCGGTGAAGATATTGAAGAAGAGAAAGCTTGTTCTCGAGTCAGTGATGAAGACGAAGATGGTTCTATTGCTAGAAAAAAGCTTAGGCTAACTAAAGAACAATCTGCCCTCTTGGAGGACAGCTTCAAACTTCATAGCACCCTCAACCCTAAGCAAAAGCAGGCCTTAGCCAGAGAGTTAAATCTCCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACGAAGCTGAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACAGACGAAAACAGGAAGCTGCAAAAGGAGCTGCAAGAACTGAAAGCCCTGAAACTAGCGCAGCCCCTGATCATGCAAATGCCGGCGGCGACACTCACCATGTGCCCCTCCTGCGAGCGAACCGGTGGTGGAGCCACCGCCGTTAACGCCGACGGCAATTCCAAGAGCCCATTTTCGATGGCTCTCATGCCCCGGTTTGACAAAGCCTTCACCAAGCCTTCTGCTGCTTGCTAA | 801 | 50.81 | MGFDDLSNTGLLLGLGLPLPSNPALLSHKPKKPVDLFSFPAPESEPSLTLGLSTPETYPLPAPETADLCRQPSPHSAISSFSGGRVKRERDVSGEDIEEEKACSRVSDEDEDGSIARKKLRLTKEQSALLEDSFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRKLQKELQELKALKLAQPLIMQMPAATLTMCPSCERTGGGATAVNADGNSKSPFSMALMPRFDKAFTKPSAAC | 266 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6593510 | 6594920 | - | Carg00761-RA | Car03g00800 | 144852 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g00800 | 266 | MobiDBLite | consensus disorder prediction | 39 | 110 | - | - | |
| Car03g00800 | 266 | MobiDBLite | consensus disorder prediction | 84 | 110 | - | - | |
| Car03g00800 | 266 | ProSiteProfiles | 'Homeobox' domain profile. | 113 | 173 | IPR001356 | GO:0003677 | |
| Car03g00800 | 266 | Pfam | Homeodomain | 117 | 171 | IPR001356 | GO:0003677 | |
| Car03g00800 | 266 | Pfam | Homeobox associated leucine zipper | 173 | 207 | IPR003106 | GO:0006355|GO:0043565 | |
| Car03g00800 | 266 | Coils | Coil | 179 | 209 | - | - | |
| Car03g00800 | 266 | ProSitePatterns | 'Homeobox' domain signature. | 148 | 171 | IPR017970 | GO:0000981|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g00800 | Car-Chr3:6593510 | Car04g00792 | Car-Chr4:4575375 | 2.36E-99 | dispersed | |
| Car10g00338 | Car-Chr10:1676097 | Car03g00800 | Car-Chr3:6593510 | 6.91E-49 | dispersed | |
| Car03g00800 | Car-Chr3:6593510 | Car07g00543 | Car-Chr7:2754898 | 1.46E-145 | wgd | |
| Car03g00800 | Car-Chr3:6593510 | Car09g00270 | Car-Chr9:1477720 | 6.19E-65 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3152 | PF00046 | Homeodomain | 5.40E-16 | CL0123 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g00800 | K09338 | - | csv:101218782 | 419.468 |