Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00826 ATGGGTGCGCCAAAGCAAAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGCAAATGGCGCACAATACTCACGGATCCTGAGTTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAAGCCAAGCTCGCACTTAAAAAGAATTCTTTGGCCCTAAAACATCATGATAATCCTATGGCTCTAAGCACCGTGCTTCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAACTCGCACTAATGGCCCAAAAGAGCCACTAGCAAGATTGGACAGACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGAGGTTCTGACCGGGCTGCAATTGCTCTGTACATAGAGGAACATTACTGGGCCCCACCAAACCTTAAAAAACTCCTTTCAACAAAATTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTGCCTTATCTGGAATAAGAAATGTTCCATTGTTACTCCTTGAGAACAAGCACTTGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAAGCAGCTATAGCTGCTGCTCGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGGGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCGTTGGAGTGCAGAACATTCCCTAGTAGAAGTCCTGTTCAGAAAGTTCTTCTCCAAGATAACAAAACTTTGCAATGA 927 43.69 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSLALKHHDNPMALSTVLQNEEIVDAKPLAISNGTTRTNGPKEPLARLDRLISEAINNLKEPRGSDRAAIALYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSALSGIRNVPLLLLENKHLDSSKAEKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRTFPSRSPVQKVLLQDNKTLQ 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6723064 6728779 + Carg00787-RA Car03g00826 144878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00826 308 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Car03g00826 308 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Car03g00826 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Car03g00826 308 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car03g00826 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car03g00826 308 Coils Coil 240 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00826 K09422 MYBP; transcription factor MYB, plant - csv:101202913 478.018
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00826 Car-Chr3:6723064 Car14g01104 Car-Chr14:9789328 2.26E-35 dispersed
Car16g00279 Car-Chr16:1733520 Car03g00826 Car-Chr3:6723064 1.43E-18 wgd
Car03g00826 Car-Chr3:6723064 Car04g00417 Car-Chr4:2361630 3.11E-72 wgd
Car03g00826 Car-Chr3:6723064 Car07g00569 Car-Chr7:2884994 5.17E-174 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g00417 . 1 336 Single Myb Histone (SMH) Gene Family AT1G49950 53.8 8.1e-65 244.6
Car03g00826 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 53.5 1.3e-62 237.3
Car07g00569 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 52.0 4.1e-61 232.3
Car07g00569 . 1 249 Single Myb Histone (SMH) Gene Family AT5G67580 53.5 6.6e-67 251.5
Car03g00826 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 53.6 9.5e-66 247.7
Car07g00569 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.8 2.9e-59 226.1
Car03g00826 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 8.0e-57 218.0
Car14g01104 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 3.1e-69 259.2
Car01g00041 CST 1 274 Single Myb Histone (SMH) Gene Family AT1G17520 51.0 5.4e-66 248.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3158 PF00538 Linker_histone 9.50E-11 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00826 Car_Chr03 FPKM 15.879408 18.423349 34.393459 32.995415 39.097084 40.721302 41.981518 10.783783 11.547152 11.781603