Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00827 ATGGAAAGGTTTTTGGAGGAGAATTTCGGGGCCGTCAAGCCCAAAAACTCGTCTGACGAGGTGCTGCAGAAGTGGAGGGACCTTTGTGGAGTGGTCAAGAATCCCAAAAGGAGGTTTCGATTCACTGCCAATCTCTCCAAGCGTGGCGAAGCGGCTGCTATGCGCCAGAATAATCAGGAGAAGTTGAGGATCGCGGTTTTAGTCTCAAAAGCTGCATTTCAATTCATTCAAGGCGTGCAACTAAGTGATTATACCCTTCCGGAGGCAGTCAAAGCTGCAGGTTTCCATATTTGTGCTGATGAACTCGGGTCTATTGTGGAAGGCCATGATCCAAAGAAGCTTAAATATCATGGTGGGGTTGAAGGGATTGCTGGGAAGCTCTGTACATCAACAACAAACGGGCTTGATGGAGATGCTGATGCACTCAACCGTAGGCAAGAGATCTATGGAGTTAATAAATTTGCTGAGAGTGAACAGAGGAGTTTCTTGGTGTTTGTTTGGGAAGCCCTCCAAGACATGACTCTCATGATCCTTGGACTCTGTGCTTTCGTCTCTTTGGTGGTTGGCATAATAACAGAAGGATGGCCTCATGGGGCTCACGATGGCCTTGGAATTGTGGCTAGTATCTTATTAGTTGTGTTTGTCACAGCAACTAGTGATTATCGACAATCCTTGCAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAGGTCACAAGGAATAGTTATAGACAGAAAATGTCGATCTACGATTTACTTCCTGGAGATATTGTACACTTGTCTATTGGGGATCAGGTCCCCGCCGATGGACTATTCGTTTCAGGGTTTTCTGTGTTGATTGATGAGTCAAGTTTGACTGGAGAAAGTGAGCCAGTGATGGTGAGTACAGAAAACCCTTATCTTCTTTCAGGAACTAAAGTTCAAGATGGATCCTGCAAGATGATGGTCACTACTGTTGGGATGAGAACCCAATGGGGTAAGCTGATGGCCACACTTAGTGAAGGTGGAGATGACGAAACTCCATTGCAGGTAAAATTGAATGGGGTAGCAACAATTATTGGGAAGATAGGTCTGTTCTTTGCCATCATCACTTTCGCTGTGTTGGTTCAAGGAATGCTTAGCCGTAAACTCCGAGAAGGGACTCACTGGAGCTGGTCTGGAGATGATGCATTAGAGATATTGGAATTCTTTGCTGTTGCAGTCACAATTGTTGTTGTTGCTGTTCCAGAAGGGCTTCCTTTGGCTGTGACATTAAGCCTTGCCTTTGCCATGAAGAAAATGATGAATGATAAGGCACTTGTCCGTCACCTGGCAGCTTGTGAAACTATGGGTTCCGCCACAAGTATTTGTAGTGACAAAACTGGAACAATCACTACAAATCACATGACAGTAGTCAAATCATGCATTTGCATGAATGTCAAGGAATCGAGTAATAACGCATCAGGCTTCTGTTCTGACCTTCCAGCCTCTGTTGTCAAACTTCTGGTACAATCAATATTCAACAACACTGGAGGAGAAGTTGTAATCAACAAAGAAGGCAAACGTGAGTTGTTGGGCACTCCCACTGAGACTGCAATATTAGAGTTTGGTCTCTCACTTGGTGGGGATTTTCAGGCTGAGAGACAGGCAGCAAAGCTTATTAAAGTTGAGCCGTTCAACTCTTCAAAAAAGCGGATGGGTGTTGTCCTTCAATTTCCTGAAGGTGGTTTCCGTGCTCACACTAAAGGGGCCTCGGAAATAGTATTGGCTGCCTGTGACAAGGTGATCAACTCGAGTGGTGAGGCTGTTCCTTTAGATGAAGCTTCCATCAAGCATCTCAATGCTACTATCAATCAATTTGCTGGCGAGGCTCTCCGAACACTTTGCCTTGCCTATATGGAACTGGAAAAGGGATTCTCTGTCAATGATCCCATTCCAGTTTCTGGTTATACCTGTATAGGAATTGTGGGAATTAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTTGCAACTTGTCGTTCAGCTGGTATTACTGTACGAATGGTTACTGGTGACAATATCAATACTGCAAAAGCTATTGCTAGGGAATGTGGAATTCTCACTGATGATGGTATAGCCATTGAGGGTCCAGATTTCAGAGAGAAAACTCAAGAGGAATTGCTTCAGATCATTCCCAAAATTCAGGTGATGGCTCGATCTTCACCTCTAGATAAGCACACTCTGGTCAAGCATTTGCGGACCACCTTTGATGAAGTTGTTGCAGTTACTGGTGATGGGACAAATGATGCTCCTGCACTTCACGAAGCAGATATTGGACTAGCAATGGGCATCGCTGGAACTGAGGTCGCCAAAGAGAGTGCTGATGTGATCATTCTTGATGATAATTTCTCTACAATAGTGACTGTGGGAAAATGGGGTCGTTCCGTTTACATAAATATTCAAAAATTTGTGCAATTCCAGCTGACTGTTAACATAGTGGCGTTGATCGTAAACTTCTCTTCAGCATGTTTGACAGGTAATGCTCCTCTTACTGCAGTCCAGCTCTTGTGGGTGAACATGATTATGGATACACTTGGAGCGCTGGCTCTCGCCACTGAGCCTCCAAATGATGGCTTGATGAAGCGCTTACCTGCCAAAGGGAAAGAAGCGTTCAATCTAGACGGCCCTGACTCTGATCTGATACTGAATACACTCATCTTCAATTCCTTTGTGTTCTGTCAGATTTTCAACGAAGTAAGTTCGAGGGAGATGGACAAAATCAATGTCTTGAAAGGCATACTTGATAACTATGTGTTTGTGCTTGTGATTGCTTCCACCATCATCTTCCAAATCATAATCATCGAATTCCTGGGAACATTTGCAAGCACAACCCATCTGGATTCGTCGCAGTGGCTGTTCAGCGTTGCGATTGGATTCCTAGGCATGCCCATTGCTGCTGTGTTGAAGACTATTAAAGCATGTATAAGTAGTAGCGCCTTTCTATCGCAAGCAATTTCTGTGGAATCTTCGCCACCAGAAATGGAAGCTTTGAGCACAAATGCATCAGTTCCTTCCCCGAAGTTTGAACCTGATATCGAGAAAATTAAGCGAACGCTCCTCCAGAAGGGTGTCCATCCCACTCCCAAAATCGTCCGCTCACTCTGCAAGAAAGAAATTCAGAAGCACAATCGCAAACTCAAGCGACTGGCCGAACGACAAGACGCTCAGTCGCCACCCCTTTCTGAGTCCCAGAAGCAGCTAATCGAGGAGGAAACTCAATTTCTGACGTTGAGAAGCGAGTACAAGGAGTTCTCTAAGGCCATTGAGGCTAGACCAGCCGGTGGCTTGATGGTCGGAAGGCCTTGGGAGAGACTGGAAAGAGTTAACCTTAAAGAGCTTACCGGTTTTAGAACGGAGTACAATCGGGATAATCTGAAGAAGGAAAGTTTGAGAGAATTGAGGAAGCTGTTTGAGGCTCGTAAGCTCGAGGAATTGCAGTGGGTTTTAGACGACGATGTGGAACTGAAGGACGAGTGGTTGGGTAGTGAAAATGGTCATTCTGACGCCGTGAAACGGAGGCGCGGCGACGGAGAGGTTATTCGGTTCCTTGTTGATAGGCTTAGTTCGAGACCAATTTCCATGAGAGATTGGAAATTCTCAAGGATGATGATACAGTCAGGATTGCAGTTTAATGAAGGTCAACTACTTAAAATTTTGGATGCTCTTGGTGCCAAGGGATGCTGGAAACAGGCCTTATCAGTGGTTGAGTGGGTGTACAATCTTAAAAGTCACAGCCATTCTAAAAGCAGGTTTGTCTATACAAAACTTTTAGCTGTTCTTGGGAAGGCAAGGAAACCACAGGAAGCCCTTCAGATATTTAATTTGATGAGAGGAGATGGCCAGATATATCCTGATATGGCTGCATATCACAGTATAGCTGTGACGCTGGGTCAAGCTGGTCTCTTGAAACAATTGCTGAAAATTATTGAATACATGAGGCAGCAACCGTCTAAAAAAGTTAGAAACATGTGCCGTAAATATTGGGATCCTGCAGTTGAACCTGACCTTGTTATATATAACGCTTCTATGGTTTTGCCTATTTATGTTCTTGCACTGAAGGGCTACATTACTGATCAAGTTATGCTGAAATCTGGAAAGTATGAGCAAGTTCACATGCTCTTTACAAAAATGAAGAATAGTGGATCAACACTAAAGGCAAATACTTACAGAGTTCTTGTCAAAGCTTTTTGGGAGGAAGGAAATGTCAGTGGAGCTATTGAGGCAGTCAGGGACATGGAACAAAGAGGAGTAGTTGGATCTGCCAGTGTCTATTATGAACTAGCTTGTTGTCTATGCTACCATGGGAGGTGGCAAGATGCATTACTAGAGGTGGAAAAAATGAAAACACTATCACACATGAAACCTTTGGTGGTGACCTTTACTGGCATGATCTTATCTTCCTTTGATGGTGGACATATTGATGATTGTATATCTATTTTCGAGTACATGAAGCAAAAATGTGCGCCAAATATAGGAACCATAAACACCATGCTTAAAGTTTTTGGTCGAATTGATATGTTTTCTAAAGCTAAAGATTTATATGAAGAAATAAAGAGAAAAGCTGATCATTCCTCCCAGAGTAGTGCTGTTTCTTCTATAGTCCCAGATCAATATACGTATGACTCGATGCTTCAGGCAGCTGCGAGTGCACAGCAGTGGGAATATTTTGAGAATGTATACAGGGAAATGGCTCTATCGGGATACCGGCTTGATCAGAGTAAGCATGCAATGCTACTTGTGGAAGCATCAAGAGCTGGGAAGTGGTATCTTTTAGATCATGCATTTGACACAATCTTGGAAGCTGGACAGATTCCCCATCCACTGTTGTTCACAGAAATGATATTGCAACTTACAACTCAAGATAACTATGAGCAGGCTGTCACCTTAGTTAGGACCATGAGTTATGCTCCATTTCAAGTAAGTGAAAGGCAATGGACAGAGCTTTTTGAAGGTAACACGGACAGAATTTGTTGGAATAACTTGAAGAAACTGTCGGATGCTCTTAGCGACTGTGATGCATCAGAAGCCACAGTCTCGAACCTGTCAAGGTCACTGCAATCTCTTTGCAAACGTGGCATCCCAGAAAACACCCCCCAGTCTATATTCAGTGACCATGATACAACGGATGGACTACAACTTACTGGATCTGAAAACATGGAGAATATGAAGCTTCACCTAGATCACGTCACTGATTGTTGTGAAGGGTCATTGGATATTATTCCTGTTAACCATGCAAGCTTGAACTGTGATTCAAAGATGCCCCCTTGGTCACTGAGTCTTTCTGATGGTGTTTTAGAAACTGGCAAGTTTTCAGATCGGTCCAACAATGAGCGCTCAACTTTTGATTTGCGTGATGACAGCGAAGATGATGAGGAAGAACTTAGCATGTTACTTGATGGATTTGATGATTCTTATGATTCAAACTTACCTTCTGTCAATGAAATACTGAAAGCCTGGAAAGAGGAGAGGAAAAACGATGGGTTATATCTCCACCCTTAA 5529 43.59 MERFLEENFGAVKPKNSSDEVLQKWRDLCGVVKNPKRRFRFTANLSKRGEAAAMRQNNQEKLRIAVLVSKAAFQFIQGVQLSDYTLPEAVKAAGFHICADELGSIVEGHDPKKLKYHGGVEGIAGKLCTSTTNGLDGDADALNRRQEIYGVNKFAESEQRSFLVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNSYRQKMSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSTENPYLLSGTKVQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIITFAVLVQGMLSRKLREGTHWSWSGDDALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTITTNHMTVVKSCICMNVKESSNNASGFCSDLPASVVKLLVQSIFNNTGGEVVINKEGKRELLGTPTETAILEFGLSLGGDFQAERQAAKLIKVEPFNSSKKRMGVVLQFPEGGFRAHTKGASEIVLAACDKVINSSGEAVPLDEASIKHLNATINQFAGEALRTLCLAYMELEKGFSVNDPIPVSGYTCIGIVGIKDPVRPGVKESVATCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELLQIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVGKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDGLMKRLPAKGKEAFNLDGPDSDLILNTLIFNSFVFCQIFNEVSSREMDKINVLKGILDNYVFVLVIASTIIFQIIIIEFLGTFASTTHLDSSQWLFSVAIGFLGMPIAAVLKTIKACISSSAFLSQAISVESSPPEMEALSTNASVPSPKFEPDIEKIKRTLLQKGVHPTPKIVRSLCKKEIQKHNRKLKRLAERQDAQSPPLSESQKQLIEEETQFLTLRSEYKEFSKAIEARPAGGLMVGRPWERLERVNLKELTGFRTEYNRDNLKKESLRELRKLFEARKLEELQWVLDDDVELKDEWLGSENGHSDAVKRRRGDGEVIRFLVDRLSSRPISMRDWKFSRMMIQSGLQFNEGQLLKILDALGAKGCWKQALSVVEWVYNLKSHSHSKSRFVYTKLLAVLGKARKPQEALQIFNLMRGDGQIYPDMAAYHSIAVTLGQAGLLKQLLKIIEYMRQQPSKKVRNMCRKYWDPAVEPDLVIYNASMVLPIYVLALKGYITDQVMLKSGKYEQVHMLFTKMKNSGSTLKANTYRVLVKAFWEEGNVSGAIEAVRDMEQRGVVGSASVYYELACCLCYHGRWQDALLEVEKMKTLSHMKPLVVTFTGMILSSFDGGHIDDCISIFEYMKQKCAPNIGTINTMLKVFGRIDMFSKAKDLYEEIKRKADHSSQSSAVSSIVPDQYTYDSMLQAAASAQQWEYFENVYREMALSGYRLDQSKHAMLLVEASRAGKWYLLDHAFDTILEAGQIPHPLLFTEMILQLTTQDNYEQAVTLVRTMSYAPFQVSERQWTELFEGNTDRICWNNLKKLSDALSDCDASEATVSNLSRSLQSLCKRGIPENTPQSIFSDHDTTDGLQLTGSENMENMKLHLDHVTDCCEGSLDIIPVNHASLNCDSKMPPWSLSLSDGVLETGKFSDRSNNERSTFDLRDDSEDDEEELSMLLDGFDDSYDSNLPSVNEILKAWKEERKNDGLYLHP 1842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6730670 6740534 - Carg00788-RA Car03g00827 144879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00827 1842 Pfam Cation transporter/ATPase, N-terminus 116 185 IPR004014 -
Car03g00827 1842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1395 1429 IPR002885 -
Car03g00827 1842 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Car03g00827 1842 Pfam PPR repeat 1398 1427 IPR002885 -
Car03g00827 1842 Pfam PPR repeat 1262 1290 IPR002885 -
Car03g00827 1842 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1546 1580 IPR002885 -
Car03g00827 1842 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Car03g00827 1842 Pfam Cation transporting ATPase, C-terminus 892 980 IPR006068 -
Car03g00827 1842 Pfam Cation transporting ATPase, C-terminus 838 879 IPR006068 -
Car03g00827 1842 MobiDBLite consensus disorder prediction 1056 1075 - -
Car03g00827 1842 Pfam haloacid dehalogenase-like hydrolase 737 793 - -
Car03g00827 1842 MobiDBLite consensus disorder prediction 1779 1799 - -
Car03g00827 1842 Pfam Cation transport ATPase (P-type) 513 591 - -
Car03g00827 1842 Coils Coil 1042 1066 - -
Car03g00827 1842 Pfam Pentatricopeptide repeat domain 1463 1512 IPR002885 -
Car03g00827 1842 Pfam E1-E2 ATPase 237 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00827 Car-Chr3:6730670 Car05g00682 Car-Chr5:4528221 0 dispersed
Car13g00354 Car-Chr13:6156432 Car03g00827 Car-Chr3:6730670 8.17E-97 transposed
Car01g01394 Car-Chr1:12157382 Car03g00827 Car-Chr3:6730670 0 wgd
Car12g00547 Car-Chr12:3620443 Car03g00827 Car-Chr3:6730670 5.38E-60 wgd
Car03g00827 Car-Chr3:6730670 Car07g00570 Car-Chr7:2892947 0 wgd
Car03g00827 Car-Chr3:6730670 Car09g00244 Car-Chr9:1342769 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00827 K01537 - csv:101212315 1769.98