Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00840 ATGAGTAATAAAACCCAAATTACGACCACGTCAGGGCACCAGCTTCGGAGGCGCCCATGGCCTGGATTGTTGTTCCCTTGTTCTTCCAAGGCTTTGGGGACTTGCTTTGGTGACGCCAATTGCATGGAACAGTTGTTGGTCCACTGCGCCAACGCCATCGAATCCAACGACGCCACTCTCGCCCAACAAATCCTTTGGGTTCTTAACAACATTGCCCCTCCCGATGGCGACTCCAACCAACGCCTCACTTCCGCCTTCCTACGCGCTCTTGTCACACGCGCTACCAACACTGGCAACTGCAAGATTCTCGCCTCCATCACCACTTCTGCCTTCTTCTCCTCCTCTCTCACCACACACACCTTCTCCCTCATGGACCTCACCGCCTTTGTCGACTTAACCCCCTGGCACCGCTTTGGCTTCACCGCTGCCAATGCCGCCATTCTCGATGCCATCGACGGTTACTCCGCCGTCCACGTCGTTGATTTCAGCCTGATGCATTGCATGCAAATCCCCACTCTTATAGACGCCATTGCTACTCGTTTCGAGGTCCCCCCTCTACTCAAACTCACAACCGTCGCTGCCGCTGCCGCTGCCGTTAAAGACGCGCCGCCGATGCTGGAGCTGTCGTACGACGAATTAGGTGCGAAATTGGTGAACTTCGCTAGGTCTAGAAACGTGAGTATGGAATTCAGAGTGGTCCCCTCTTGCCATACAGACGGTTTTGCCAATTTAATCGAACAAATCCGAGTGCAACATTTAATTTACGGACCCGAAAATAACGGAGCGCTGGTTTTTAATTGCCACATGCTTCTCCATTACATACCCGAAGAAACACTAAACCCAAACCCCTCTCCCAGTTTCGACATGTCGTCTTCAGTCCGATCCATGTTTCTCAAAACCATCCGTAGCTTAGATCCAACGATTGTGATTCTAGTAGAGGAAGATGCGGATTTCACGTCCACCGAATTAGTTAGCCGATTGAGATCCGCATTCAATTACCTGTGGATTCCTTACGACTCCATGGATTCCTTTCTTCCGAGGAGCAGCAAGCAGAGGGAATGGTACGAGGCCGACATTTGTTGGAAGATCGAGAACGTAATCGCCCACGAAGGCATCCAGCGAGTTGAAAGATTGGAGCCCAAGGGGCGGTGGGTTCAGCGGATGCGCAACGCCAAATTCCGCGGTGCTCCCTTCGGAGACGAGGCGGTTTCAGAGGTGAAAACGATGCTGGACGAGCATGCGGCGGGATGGGGGTTGAAGAAGGAAGACGACCACCTGGTGCTGACATGGAAAGGGCACGACGTCGTATTCGCCACCGCTTGGGTACCTTGCTAA 1335 52.96 MSNKTQITTTSGHQLRRRPWPGLLFPCSSKALGTCFGDANCMEQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVTRATNTGNCKILASITTSAFFSSSLTTHTFSLMDLTAFVDLTPWHRFGFTAANAAILDAIDGYSAVHVVDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAAAAAAVKDAPPMLELSYDELGAKLVNFARSRNVSMEFRVVPSCHTDGFANLIEQIRVQHLIYGPENNGALVFNCHMLLHYIPEETLNPNPSPSFDMSSSVRSMFLKTIRSLDPTIVILVEEDADFTSTELVSRLRSAFNYLWIPYDSMDSFLPRSSKQREWYEADICWKIENVIAHEGIQRVERLEPKGRWVQRMRNAKFRGAPFGDEAVSEVKTMLDEHAAGWGLKKEDDHLVLTWKGHDVVFATAWVPC 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6801737 6803071 + Carg00801-RA Car03g00840 144892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00840 444 ProSiteProfiles GRAS family profile. 33 442 IPR005202 -
Car03g00840 444 Pfam GRAS domain family 42 441 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00840 Car-Chr3:6801737 Car07g00575 Car-Chr7:2915594 3.97E-55 dispersed
Car03g00831 Car-Chr3:6753922 Car03g00840 Car-Chr3:6801737 3.47E-51 proximal
Car19g00735 Car-Chr19:8286139 Car03g00840 Car-Chr3:6801737 1.50E-113 transposed
Car03g00840 Car-Chr3:6801737 Car07g00583 Car-Chr7:2961944 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3164 PF03514 GRAS 1.40E-90 CL0063 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00840 - - cmos:111453455 865.144