Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00872 ATGGAGGGCGGAGGAGAGGGAGGTCGGGAGGGTACCAGAAAAAGAGGGGTCCACAATCAGAAGCTGTACAAAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATTCGAGAACCCAATAAGCGCTCCAGGATTTGGCTCGGCTCTTACTCTTCTCCAGTGGCCGCTGCCAGGGCCTACGATACCGCCGTGTATTACCTCAGAGGCCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTAGCCGGGGAAGGACGCGGAATTAGCGGCGGTGGATGTGGCGACATGTCGGCGGCTACTATACGGAAGAAAGCCACGGAGGTGGGCGCACGAGTGGATGCTCTGGAGAGTTCCTTAGGTCATCACCAACACAATCACAACAATCGGAACCATCATTCCCACGCATCGGCGTCTCCGCCAGAGACGAAAGCCTGCAGCGGGTTTTTGGATCGGATGGATTTGAACAAATTACCCGACCCGGAAGAAGATGATGAAGAAGGAGATGGGGAGTTCGAGTGGGAGAGACAATGA 534 55.43 MEGGGEGGREGTRKRGVHNQKLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVYYLRGPSARLNFPELLAGEGRGISGGGCGDMSAATIRKKATEVGARVDALESSLGHHQHNHNNRNHHSHASASPPETKACSGFLDRMDLNKLPDPEEDDEEGDGEFEWERQ 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6969206 6969739 + Carg00833-RA Car03g00872 144924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00872 177 MobiDBLite consensus disorder prediction 160 177 - -
Car03g00872 177 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Car03g00872 177 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Car03g00872 177 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Car03g00872 177 Pfam AP2 domain 23 71 IPR001471 GO:0003700|GO:0006355
Car03g00872 177 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Car03g00872 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 6 166 - -
Car03g00872 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 6 166 - -
Car03g00872 177 MobiDBLite consensus disorder prediction 122 177 - -
Car03g00872 177 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Car03g00872 177 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Car03g00872 177 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00872 Car-Chr3:6969206 Car05g01271 Car-Chr5:11800091 2.15E-24 dispersed
Car11g00629 Car-Chr11:3450772 Car03g00872 Car-Chr3:6969206 3.46E-22 dispersed
Car15g00014 Car-Chr15:179286 Car03g00872 Car-Chr3:6969206 4.69E-23 dispersed
Car02g00362 Car-Chr2:2680063 Car03g00872 Car-Chr3:6969206 1.19E-53 transposed
Car01g01427 Car-Chr1:12308932 Car03g00872 Car-Chr3:6969206 6.84E-50 wgd
Car03g00872 Car-Chr3:6969206 Car05g00144 Car-Chr5:721418 3.58E-45 wgd
Car03g00872 Car-Chr3:6969206 Car09g00205 Car-Chr9:1025550 8.75E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3167 PF00847 AP2 3.70E-11 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00872 K09286 - csv:101214481 233.417