Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00873 ATGTGGGATCTGAACGACTGCCCTGATGTGAGGGAGGGGGATGAATCCGAAGCCTGTTCCTCTGCCAAGACCTCCATCGAGGGAGACGGGGATGATGACAAACGGAAAAGGGTGGGATCGGCTTCCAATTCCAGTTGTTCGGCTGCGGAGGAGGAGGAGGAGTTGGAGGAGGAAGAAGAGGAGGAGGAAGGATCCGATGAGGTATTGGGCTCCATGGTCATGCAGATTGACACACAAACCCCAAGCCCTGTAACTCGCCAGTTTTTCCCACTTGAAGACACTGAAATCCCACCTCCCCTTCCACTTCCAACTACTGATTCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGGCCATCCCGATCCTAATAATAACTCCATCAACCCCAATGACCTCTCCCACCCCATTAAGAAGAGCCGCCGGGGCCCAAGGTCTCGTAGCTCCCAGTATCGCGGGGTCACTTTCTACCGGAGAACCGGCCGCTGGGAGTCTCATATTTGGGATTGTGGAAAGCAGGTTTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAGGACGACTTAAAACAGATGGGTAATCTAACAAAGGAGGAATTTGTGCATGTTCTTCGCCGACAAAGCACTGGGTTTCCCAGAGGAAGCTCCAAGTATAGAGGTGTAACGCTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTTTATCTGGGTTTGTTTGATACCGAGATCGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATTTACGAGAGTGAGCTGAATCCGACAACTGGTAACACACAGGAAAAAAACACACACACGCAGACTTATTGTTTTAACTTGTTGGAAATGAATGATTTTTTCTGTTTTGACTCAACTAGCAACTTAGCAGACCACAGTCTTGATTTGAGTCTGGGAAATTCAAGCTCAAAGCAAAATGACAGCCCAAATGGTTCCTTAGATCCGCACCATTCTTCTTCAGCTCCTCTACCGATGGAAGCTGATTGGCAACGTAGTCAAGGATTTAGGCCTCCGCAGCTAAATTTGCTGCAAGAATCAAGCAGCGGAGGAGGTAGTGGAAACAAAAATTACAATAATGCACAGAGAGGAAACACTAATAGGTACCTGGAGAGTGAAACTATGCAGCTGCTAAGCCAAACACACATTCAATCTCCAATTTCCTTTGAAATGCAAAGACATGGGCAATTCAGGCGGCAGGCGGGTGGTGTAGATCAGCCCCACTCCCAGATATTGCTTCACAATCAAAATCATCCAACCTTCAATCATCAAATTCAGTTTCCGGGCAGCAGTAATGGAGGCCGAATAATAGGAAGTGATCTATCACTATCTCTAAGTGATCATCAGAATCAAGTTGTTGAATCGGGGCCATCGCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCTCTCCCCAGATTAGACCTTCCAAGAATTGGCTGCACAAGAATGGGTTTCATTGTCTCATTAGACCCTCCTAA 1644 47.81 MWDLNDCPDVREGDESEACSSAKTSIEGDGDDDKRKRVGSASNSSCSAAEEEEELEEEEEEEEGSDEVLGSMVMQIDTQTPSPVTRQFFPLEDTEIPPPLPLPTTDSAFPRAHWVGVKFGHPDPNNNSINPNDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYESELNPTTGNTQEKNTHTQTYCFNLLEMNDFFCFDSTSNLADHSLDLSLGNSSSKQNDSPNGSLDPHHSSSAPLPMEADWQRSQGFRPPQLNLLQESSSGGGSGNKNYNNAQRGNTNRYLESETMQLLSQTHIQSPISFEMQRHGQFRRQAGGVDQPHSQILLHNQNHPTFNHQIQFPGSSNGGRIIGSDLSLSLSDHQNQVVESGPSQVLATAAASSGFSPQIRPSKNWLHKNGFHCLIRPS 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6972936 6975549 + Carg00834-RA Car03g00873 144925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00873 547 MobiDBLite consensus disorder prediction 1 67 - -
Car03g00873 547 MobiDBLite consensus disorder prediction 355 372 - -
Car03g00873 547 MobiDBLite consensus disorder prediction 49 67 - -
Car03g00873 547 ProSiteProfiles AP2/ERF domain profile. 151 207 IPR001471 GO:0003700|GO:0006355
Car03g00873 547 MobiDBLite consensus disorder prediction 120 151 - -
Car03g00873 547 Pfam AP2 domain 151 199 IPR001471 GO:0003700|GO:0006355
Car03g00873 547 Pfam AP2 domain 242 291 IPR001471 GO:0003700|GO:0006355
Car03g00873 547 ProSiteProfiles AP2/ERF domain profile. 243 300 IPR001471 GO:0003700|GO:0006355
Car03g00873 547 MobiDBLite consensus disorder prediction 395 417 - -
Car03g00873 547 MobiDBLite consensus disorder prediction 355 379 - -
Car03g00873 547 Coils Coil 41 68 - -
Car03g00873 547 MobiDBLite consensus disorder prediction 1 18 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g00873 Car07g00688 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00873 Car-Chr3:6972936 Car07g00921 Car-Chr7:5119172 5.49E-10 dispersed
Car14g00972 Car-Chr14:6919663 Car03g00873 Car-Chr3:6972936 4.00E-122 transposed
Car03g00873 Car-Chr3:6972936 Car07g00688 Car-Chr7:3534692 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3168 PF00847 AP2 3.80E-10 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00873 K09284 - csv:101214724 668.692