Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00876 ATGTCTGACCACAAATCAGGCTCCATGACCGACCAGCTCTCCAAGCAGACTTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGCGTAGGAGCAGCTTTTGTGCTCTTTCTGTTTCTTATTTCTCTTTGGATCGCTTCTAAACGCTCTCGCAAGAACATTTCTCACAAACCCACAATTCCAATCGTCTCCAAAGAAATCCAAGAGATCAGAATCGAGCAGCCCCTCGCTCAAAACCAAGAAAATAAGCCTAGTAGTAGAGCCCATTTTCAGGTCGAGCCGGAAGTAATCCCCGGAGTTGAGCGCCAAGCGTTGCTTTCGTTGCCTCAGGACGAAGAGCGAGTGAACAGGATTCATATTGAGATCGGGAAGGATCATAGGATTTCATATCCTGAGCGCCTAGGTCGGTCGTCTTCCTCGCACGGCAGTGTAGAGGGCCGATGTGGTGGTGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCCCATTTGGGTTGGGGGCATTGGTACACTCTCAGAGAGCTCGAAGCTTCCACTAACGGCTTCGCCCCCGATAATGTAATCGGTGAGGGTGGGTATGGAATTGTTTATCATGGCATATTGGAGGATGGAACTCAGGTTGCTGTTAAGAATTTACTAAACAATAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACACAAGAACCTAGTTAGATTACTTGGATACTGTGCTGAAGGTGCTCACAGGATGCTTGTATACGAGTACATAAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTGGGATCTTTCAGCCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACCGCTAAAGGGCTAGCTTATCTTCACGAAGGATTGGAACCAAAGGTTGTTCACCGGGATATCAAATCAAGCAATATATTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAATAGCTATATCACAACTCGAGTCATGGGAACATTTGGCTATGTAGCGCCAGAATATGCAAGTACGGGGATGCTAAACGAAAGAAGTGATGTGTATAGTTTTGGAATACTCGTCATGGAAATAATCTCAGGAAGGAACCCTGTCGATTATGGTCGTCCTCCGGATGAGGTACACTTGATCGATTGGCTTAAGAGATTGGTTAGTAACCGTAACCCGGAGGGCGTATTGGATCCAAAGCTTTCTGAAAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTTCTTGTTGCACTACGCTGTGTGGACCCAAATGCTCAGAAGCGGCCAAAAATGGGACACATTATTCATATGCTTGAAGCTGAAGAGGCTACCTTAAAAGGGGATCGCAAAACTGGAAAGAACCCAGAGAACTCACATTCAGACAATGTCAAGGATGGATTAAGTGAAAGGCAGGCGACAGAATTAGGTGAAACCAACGTGGATGAACAACGAGATACGTGA 1509 45.66 MSDHKSGSMTDQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRKNISHKPTIPIVSKEIQEIRIEQPLAQNQENKPSSRAHFQVEPEVIPGVERQALLSLPQDEERVNRIHIEIGKDHRISYPERLGRSSSSHGSVEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVDYGRPPDEVHLIDWLKRLVSNRNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEEATLKGDRKTGKNPENSHSDNVKDGLSERQATELGETNVDEQRDT 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6991828 6995228 + Carg00837-RA Car03g00876 144928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00876 502 CDD STKc_IRAK 189 455 - -
Car03g00876 502 PANTHER RECEPTOR-LIKE KINASE PLANT 1 495 - -
Car03g00876 502 PANTHER OS01G0323000 PROTEIN 1 495 - -
Car03g00876 502 ProSitePatterns Protein kinases ATP-binding region signature. 189 211 IPR017441 GO:0005524
Car03g00876 502 Gene3D Phosphorylase Kinase; domain 1 164 258 - -
Car03g00876 502 SMART serkin_6 183 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00876 502 Pfam Protein kinase domain 186 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00876 502 ProSiteProfiles Protein kinase domain profile. 183 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g00876 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Car03g00876 502 MobiDBLite consensus disorder prediction 461 502 - -
Car03g00876 502 SUPERFAMILY Protein kinase-like (PK-like) 164 455 IPR011009 -
Car03g00876 502 Gene3D Transferase(Phosphotransferase) domain 1 259 470 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00876 Car-Chr3:6991828 Car06g00916 Car-Chr6:7070802 0 dispersed
Car18g01179 Car-Chr18:11475470 Car03g00876 Car-Chr3:6991828 1.03E-79 dispersed
Car12g00513 Car-Chr12:3402851 Car03g00876 Car-Chr3:6991828 7.27E-90 wgd
Car03g00876 Car-Chr3:6991828 Car05g00148 Car-Chr5:745968 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88733 PF00069 Pkinase 1.20E-46 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00876 - - cmax:111497422 929.472