Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00926 ATGGCGAATGAGTTTGGGGAATCAACAAGTGTGCCACATCAAAACCCTTCTTGGTCCAGTAATAGTGACAACACTAACAATGATACTGGCGATTTTGAATGCAATATCTGCTTCGAGTTAGCTCAAGACCCAATTATCACTCTTTGCGGCCATCTCTTTTGCTGGCCCTGTCTGTATAGATGGCTGCATCATCACTCGCAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTGTTCAGGAGGAGAAGTTGGTTCCTCTTTATGGTAGAGGTAAAGCACCATCTGACCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAATCGCCCTGCCGGGCAAAGGCCTCAAACAGCACCACCCCCTGCAGCTAATGACTTTGCAAACTACGGGTTTGGATTCACTGGTGGCTTTATGCCAATGGCGGCAGCAAGGATTGGGAACTTCACTTTAGCTACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACAGTGTATGGAACCACCTCTGGTTACCCCTATGCATTCAACACATTCCATGGGGGTCATGGTCACCATTTTCCACAGCCACCGAGTCGAGGTCAGCATGCTGATAACGTACTGAAAAATCTCTTTTTACTCGTCGGCGTCTTCGTAATTCTTGCCTTGCTTTGGTGGTGA 687 45.85 MANEFGESTSVPHQNPSWSSNSDNTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALVQEEKLVPLYGRGKAPSDPRLNRYPGIDIPNRPAGQRPQTAPPPAANDFANYGFGFTGGFMPMAAARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPPSRGQHADNVLKNLFLLVGVFVILALLWW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7272959 7274319 - Carg00889-RA Car03g00926 144978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00926 228 MobiDBLite consensus disorder prediction 1 24 - -
Car03g00926 228 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 227 - -
Car03g00926 228 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Car03g00926 228 SUPERFAMILY RING/U-box 30 87 - -
Car03g00926 228 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Car03g00926 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Car03g00926 228 CDD RING-HC_AtRMA_like 32 76 - -
Car03g00926 228 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Car03g00926 228 SMART ring_2 34 74 IPR001841 -
Car03g00926 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
Car03g00926 228 MobiDBLite consensus disorder prediction 94 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00926 Car-Chr3:7272959 Car12g00466 Car-Chr12:2941124 9.51E-68 dispersed
Car03g00926 Car-Chr3:7272959 Car05g00180 Car-Chr5:958231 4.70E-79 wgd
Car03g00926 Car-Chr3:7272959 Car07g00739 Car-Chr7:3812415 9.15E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00926 K10666 - csv:101205026 446.047