Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00946 ATGGGATCATCGGCGTCGGAAGAAGACTTAATAATGGCGACTCTACTGCAAGCCGAACAAGCCGCCGCTATCACCACCAATTTCGCTTCTTTCCCTGAAAACATCAATAATCTGGTTCAGCAAACCCTAAAACCCTTCCTCTTCTTCAAAGCCGACGACCAATATTCGTTACAACAACAACAACAACAACAACAACAACAACAATCGGTTTTCCCGTTCCCGTTGCCCTCAACCACCGCCACCGCCACCGCCACCTCCCATCTCCTTTCCTCTCTCCTCAGATCCTCGCCTTCCTCGGTCAGGGATGCAGAAGAGAGAGGAAACGACGGCGACAACCGCAAGGGTGGATTGAGGGTGAGGACGGTGAAGATGAAGAGAATGAAAGGGAGGAGGAAAGTGAGAGAGCCGAGATTCTGCTTCAAAACCATGACGGATGTGGACGTTCTTGACGACGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTTAAGAACACCCTCCATCCAAGGAGTTACTATCGTTGCACGGAAGAGAATTGTAAGGTAAAGAAACGAGTAGAAAGATTAGCAGAAGATCCGAGAATGGTAATAACGACCTACGAAGGAAGACACGCTCATTCACCGTCCGATCCTAATTTAGAACACACCAACATGGGTTGCCTCAACACTTTGTTTTGTTAG 681 48.02 MGSSASEEDLIMATLLQAEQAAAITTNFASFPENINNLVQQTLKPFLFFKADDQYSLQQQQQQQQQQQSVFPFPLPSTTATATATSHLLSSLLRSSPSSVRDAEERGNDGDNRKGGLRVRTVKMKRMKGRRKVREPRFCFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLAEDPRMVITTYEGRHAHSPSDPNLEHTNMGCLNTLFC 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7357790 7358624 + Carg00909-RA Car03g00946 144998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00946 226 MobiDBLite consensus disorder prediction 99 116 - -
Car03g00946 226 ProSiteProfiles WRKY domain profile. 144 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car03g00946 226 Pfam WRKY DNA -binding domain 150 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car03g00946 226 MobiDBLite consensus disorder prediction 92 116 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g00946 Car20g00950 CCT
Car02g00417 Car03g00946 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00946 Car-Chr3:7357790 Car17g00350 Car-Chr17:2214403 4.63E-37 dispersed
Car06g00779 Car-Chr6:6012452 Car03g00946 Car-Chr3:7357790 3.37E-49 transposed
Car12g00609 Car-Chr12:4142433 Car03g00946 Car-Chr3:7357790 1.62E-49 transposed
Car02g00417 Car-Chr2:3278398 Car03g00946 Car-Chr3:7357790 2.21E-24 wgd
Car20g00950 Car-Chr20:10898379 Car03g00946 Car-Chr3:7357790 3.10E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3179 PF03106 WRKY 4.40E-25 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00946 - - cpep:111804309 344.739