Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00961 ATGGATACCGCTGGGAGACTCATTGCTGGGTCTCATAATCGAAACGAGTTTGTTCTGATCAATGCAGACGAGACTGCTCGGATCAAGGCTGTGAAGGAATTGAGTGGACAAACATGTCAGATTTGTGGAGATGAGGTTGAGTTAACTGTTGAGGGAGAGCTCTTTGTTGCCTGTAATGAATGTGCTTTCCCAGTTTGTAGACCTTGTTATGAGTATGAGAGAAGAGAGGGAAACCAAGCTTGTCCACAGTGTAAAACCAGATACAAACGCATTAAAGGTAGTCCGAGGGTTGAGGGTGATGAGGATGAAGATGGTATCGATGATTTGGACAACGAGTTTGACTATGCAAACCTCGATTCTTTGGGCCCTTATCATTCTGGAGAGGGAACGTATGGCTCGTACCATAACATGGGCCGTGGACAGTCGGAGGTCGAACCTTCTCCCCTTGGTTCTGAGATTCCTCTGCTGACATATGGCGAGGTGGATTATGAGATTTCTTCTGATCAACATGCTCTTGTGCCCCATTTTATGGGTCACGGGAATCGAGTCCATCCAATGCCTTTCCATGATCCATCAATTCCTTCTCAACCTAGACCGATGGTTCCCCAAAAAGATATTGCGGTGTATGGTTATGGGAGCGTGGCATGGAAGGACCGAATGGAAGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAACACCAAGGAGTCGATGATGGTGGAAACGATATCGATGATCCCGATTTGCCCATGATGGATGAAGCTAGGCAACCACTATCAAGGAAATTACCCATCTCTTCGAGCAGGATAAATCCATACAGATTAATCATCTTGCTTCGTCTTGTTATTCTTGGCCTGTTTTTCCAGTACAGAATTCTTCATCCAGTTAAAGATGCGTATGGCCTATGGTTAACTTCGGTAATATGTGAAATATGGTTCGCCGTTTCGTGGATTCTGGATCAGTTCCCAAAATGGTGTCCAATAGAACGGGAAACTTATCTCGATAGGCTGTCACTGAGGTATGAGAAAGAAGGGAAGCCTTCTGAATTAGCCAGTGTGGACGTATTTGTTAGTACTGTCGATCCAACGAAAGAACCTCCATTGATCACTGCAAATACAGTACTTTCCATCCTTGCAGTCGACTACCCAGTCGATAAAGTTGCATGCTATGTCTCGGATGATGGTGCAGCCATGTTAACATTCGAAGCACTCTCGGAGACATCTGAATTTGCAAGGAAATGGGTCCCTTTCTGTAAGAAATTCAATATCGAGCCCCGTGCCCCCGAGTTTTATTTCTCTCAGAAGATCGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCGATGAAGAGAGAGTACGAAGAGTTTAAGGTTAGGATAAATGCTTTGGTCTCCATGTCTCTAAAGGTTCCCGAGGATGGCTGGACAATGCAAGACGGTACTCCATGGCCTGGGAACAATGTTCGAGACCACCCCGGCATGATTCAGGTTTTCCTTGGCCAGAACGGAGTATGCGACATTGAAGGAAACGAGCTACCACGTTTGGTTTATGTTTCTCGTGAAAAGCGGCCAGGGTTCGAACATCACAAAAAGGCCGGTGCCATGAATTCACTGATTCGGGTCTCAGCTGTTCTGTCAAACGCTCCCTATCTTCTTAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCGACATCCGGGAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTCGATGGGATTGATCGACACGATAGATATTCAAACCGGAACGTTGTATTCTTTGATATTAACATGAAAGGACTAGACGGAATACAAGGACCGATATACGTTGGTACGGGATGTGTTTTCCGGAGGGTTGCTCTCTACGGATTTGACGCTCCTGCCGAGAAAAAACCGCCAAGCAAAACATGCAACTGTTTGCCAAAATGGTGCTGTCTATGTTGTGGGTCTAGAAGGAACAAGAAAGGAAAGGCTAAGAATGAGAAAAAGAAGAAGACCAAGCACAGAGAAGCATCAAAGCAGATCCATGCTCTCGAGAATATCGAGGAGGGAATCGAAGAACTAAGCATAGAGAAACTGAGCGTGTCTGAAATAAAACTGGCGAAGAAATATGGGCAATCTCCAGTGTTCGTCGCCTCGACCCTGTTGGAAAATGGAGGCGTTCCTCATGACGTGAGTGCTGCATCTCTTCTAAGAGAAGCCATTCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCTGTGACTGAAGATATCTTAACTGGATTCAAAATGCACTGTCATGGCTGGCGGTCGGTGTATTGTATTCCGAAGAGACCCGCGTTTAAGGGGTCAGCTCCGATCAATCTCTCGGATCGTCTACACCAAGTTCTTCGGTGGGCTTTAGGATCTGTCGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGTTATGGAGGCGGGTTGAAATGGTTGGAACGATTCTCGTACATAAACTCGGTGGTCTATCCGTGGACCTCGATTCCGTTGCTCGTTTACTGTAGTCTTCCAGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCTGAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCGACGGGTATCCTCGAGATGCAGTGGGGCGGTGTCGGGATCGACGACTGGTGGAGGAACGAGCAGTTCTGGGTTATCGGAGGCGTTTCGTCGCATCTTTTTGCTCTCTTCCAAGGTCTACTCAAGGTTTTAGCCGGTGTGAGTACCAACTTCACAGTTACATCCAAAGCAGCCGATGATGGTGAATTTTCAGAGCTCTATATTTTCAAGTGGACATCACTGTTAATACCTCCCACAACCTTGTTGATCATAAACATCGTCGGTGTGATCGTCGGGATCTCAGATGCCATCAATAATGGATACGATTCCTGGGGTCCTCTTTTCGGGAGGCTATTTTTCGCTCTTTGGGTGATTATCCACCTCTACCCGTTCCTGAAGGGATTGTTAGGGAAACAGGATCGGATACCGACGATCATCGTTGTTTGGTCCATTCTTTTAGCCTCAATCTTAACATTACTTTGGGTAAGGATCAACCCATTTGTATCCAGAGATGGTCCTGTTTTAGAAGTTTGCGGGTTGAACTGTGATTAG 3249 45.4 MDTAGRLIAGSHNRNEFVLINADETARIKAVKELSGQTCQICGDEVELTVEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDGIDDLDNEFDYANLDSLGPYHSGEGTYGSYHNMGRGQSEVEPSPLGSEIPLLTYGEVDYEISSDQHALVPHFMGHGNRVHPMPFHDPSIPSQPRPMVPQKDIAVYGYGSVAWKDRMEDWKKKQNDKLQVVKHQGVDDGGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFQYRILHPVKDAYGLWLTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPTKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINALVSMSLKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDIEGNELPRLVYVSREKRPGFEHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRVALYGFDAPAEKKPPSKTCNCLPKWCCLCCGSRRNKKGKAKNEKKKKTKHREASKQIHALENIEEGIEELSIEKLSVSEIKLAKKYGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRIPTIIVVWSILLASILTLLWVRINPFVSRDGPVLEVCGLNCD 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7453357 7459492 - Carg10560-RA Car03g00961 145013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00961 1082 Pfam Cellulose synthase 355 1070 IPR005150 GO:0016020|GO:0016760|GO:0030244
Car03g00961 1082 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Car03g00961 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g00961 Car07g00766 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00819 Car-Chr1:5984072 Car03g00961 Car-Chr3:7453357 0 dispersed
Car03g00961 Car-Chr3:7453357 Car09g01056 Car-Chr9:9352842 0 dispersed
Car03g00961 Car-Chr3:7453357 Car07g00766 Car-Chr7:3986767 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00961 K10999 - csv:101211094 2059.65