Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00971 ATGAAGAGTAAATATGACTCGCAGGCTCAAAGACGGAACCCTCAAATCCTCTGCAACTTCCAGGCTTACACAAGCCGCTATATCTGTTCCAATCCTAAGCGACAAATACAGTCGCCGACGTTCATCGGAACTGCCCTCACCGGAATGACTCGAGACGGCGTACAATTCGACGCGGCGAAACGATCATATCGAAATTCTAAGGCCGAGGGGAACCGGCACGAGGAAGCCAAATGGGCCAATGTAATCGGCAATATCTTGAAGAATAGAGGAGAATACGTAAAAGCACTTAAGTGGTTTCGGATTGATTACGATGTGTCGGTTAAGTACTTACCTCAGAAGCATATGCTGGCAACGTGCCAGTCTCTGGGCGAGGTCTATCTTCGGCTTGAACACTTCAAAGATGCTCTTATTTATCAGAAGAAACATTTAGAGCTAGCCAAAGATGCTAATGACCTCGTGGAACAACAAAGAGCTAATACTCAACTGGGTCGTACTTACCATGAGCTATTTTTGAAATCTGACGACGACCATTTTTCAGTTCGAAATGCCAAAAAGTATTTCAAGGCTGCCATGGAACGTGCAAAGTTTCTGAAAGATCACCCACCAAAAATTGGATGTTCATTCCTCAAGGAATATATTGATGCTCATAATAATTTGGGAATGCTTGAAATGGATCTTGATAATTTGGAAGGGGCCAAAAAGATCTTAACGAAAGGACTAGAAATTTGTGACGAAGAAGAGGTGGATGAGGATGATGATGGTCGTAGCAGGCTCCATCACAACCTTGGAAGTGTATATATGGAGCTAAGAATGTGGGATCAAGCTAAGAAGCATATTGAGAAGGACATAATTATCTGTAAGAATATTGGGCATTGCCAAGGAGAGGCTAAAGGATACATTAACCTTGGTGAATTGCATTACAGGGTCCAAAAGTATGATGAAGCAATTCATTGCTATCGGAAGGCTCTTCATCTAGCAAAATCAATGGAAGACGAGGATGCTTTGGCAAGGCAAATTGATCAGAATATTAATACTGTTAAGGAAGCTGTACAAGTGATGGTTGCACTAAGAAAAGAAGAGCAGAATCTTAAGAAGCTAATGAGAGAAATGGTCACTGCTAGAGGCACACCTCGTGAGCGCAGATGTCTACTGCAGCAAAATGCTTCTCTTGATTGCTTAATTGAAAAATCAAGTACGATTTTTGCATGGATGCAGCATCTTGAATTTGCAAAAAGGAAGAAAAGGGTTGCAAGTGAACTTTGCGACAAGGAAAAGCTGAGTGATTCTTATCTGGCTATTGGTGAATCATATCAAAAACTAAGAAAATTCACAAAATCCATTAAATGGTATGTGAAGAGCTGGGAAGTATACAAGTCTATTGGTAATTTAGAGGGACAAGCACTGGCCAAGATTAATATTGGTGACGTTTATGACTGTGATGGCAAGTGGACAGAAGCATTAGATGCATTTGAAGAGAGTTACAGGATTGCTCTGGAGGCTAAACTTCCTTCTGTCCAGCTTTCAGCACTGGAGAATATGCATTATAGCCACATGATACGATTTGATAATGTGGAAGAAGCTAGGCGGTTACAGTCCCAAATTGACCAATTGAAGGAAAAAACGAAAAGTGGTAATGAAACAAAATTTGTAGCAGAGGATTGCTGCTCTGAAACTGATTCAGAAGAGGCTCTGTCAGACATTCCATCTAATGAGTGCTTGTCAGAAACTAGAAAATCTTGTAACAGCAGATTTAATTCTTCAAAATCTTTAGCTGATTTAGAAGAGCCAAATGACCCAGTTACTTTTACGTCATCCCTCAAGCGGCATGAAAGTTCACCTAAAATGAAATCAATTGACATGGAAAAATACAATGCTTCTTCTAACCCTTCTGAATTTTCACCTAAAAGTTTGTCTCAGTCAGCTGGTAGCCAACAGACTACCATTGGTCGTAAACGTGTTCGTGTGATTCTTTCTGATGATGAGGGTGAGGATGAAATGATTGATTTCTCAAAATCAAGGCCTCATTTATGCCGGGGAGAGAATTCTGCAACTTCTGATGAGAACAAGAATAAACAATGCTCAGGAAATATTGCTGCAGAAATTAAGGAGGGTTCAGTAACAACCAGCAAACATGCAAGCAGGTCTTGCGAAGACATTGAAGAAAGCACTGGTTCATATAAATACAAGAGTCGAATTGTCGCTTCTCAAAATGATAAAGTTTTTGGAACTCAAAATGCTGAAGAAATATTTCGTTCTGATTCTGCTGCTAGTGGCTCAAAATTTGAAGTTGACATCTCGGAAAATCTGTTGCATAAATATAATGCTACCAAGTTGAATCCTTCTGAGCAGGGTGAATGTGTTACATTCAAAATTGATAATAAGCTGATACACATAGAGATTGCATCATTCGGAGATATGCTAACCATTGAATCTGCGAAGGAAGAACTAGCATGCATTTACTATCTACAACTTCCCTTTGAAAAGAGATCAGAGGGTCTGTTACCTGTGATTCAACATATAAGTTGTGATGGGAGAACTCTGGAGAACCTTGAATTTTTAAAACCCTATGGCCATGAGAGAAATCTTTTGTTTGATGCCGTCGATGTGCTGTTGTTCACAATGGGGTTATTTGCTGATAGAGTCAACTTAATGAAAACATCGTTTTATACCTTGACAGGATGGGTTTCAAAACCCTTGATAAAACTGTATATTGATTACTGCAAGGAGTTATCCGAGACACCTAACATGAAGTTGCTGAAAAAACTGTACAATCTGGAGGCTTCAGATGACGAGATTGCGGTGCCTGATTGTGATCTGCAAGACTTATCTATAAGAAATGGAACGATGGAAAAAATTCAGCAGGTCTTCAAGCAGTCCAGCCAGACACATGACTTAACGTTAGATTTACACTGCAATCGATTTGGTCCAACTGCTTTATTCCAGATTTGTGCATGCCCTATTCTTTTCACTCGATTGGAAGTGCTTAACATATCTGGAAATCGCCTAACCGATGCTTGTGGATCATACCTTTCAACTATCTTAAAAAACTGCAAAGGTCTTTGGAGCTTGAACATTGAACGATGTTCCATCACATCTAGAACAATTCAGAAGGTTACTGATGCATTGGAAGTTGGAGCATCCCTTGAAAAGCTGTATATAGGATACAACTCAATCTCTGGAAATGCCCTCAGTAGTTTATTTGTTAAGCTCACAGCACTGAATAGGTTTACAAGTCTTAGTCTAAGTGGTTTGAAGTTGAGCAAGCCTGTTTTGGAAGGCCTTCTCCAGCTTATTAAATCCTTGGGGTTGTCTGGATTAATGCTTGGGAGCACTGGAATTGGAGATGATGCTGCATTAGAGATAACTGAGTCATTTAGCGGAAGTGAAGAGCTTGTGAAACTTGACTTAGCTTATTGTGGACTGACATCCAAATACCTTGTCAAATTTGGTGGTTGCATTTCTATTATACAGCGCATTCATGAGCTGAATCTTTCTGGGAATGCCATCATGCAAGAGGGTTGTAATGCAGTATCGTCACTGATAGCTAACCCTCAATGTGGCTTAAAAGTGCTGCTTCTCAACAAGTGTCAGCTTGGCCTAGATGGAGTTGTTCAAATCATTCAGTCTGTCGCAGGTAACTACTATCTTGAAGAGCTCAATCTTGCCGACAACGTTGATCTTGATAAACATGCCCTGCAATGTAACATAACAGAGAAAGAAAGTAAAGAACTTAAACAACCGTGCCACGATATATCTAAACCTCAAGGCCTAACATGTTCAATAGAGGAGTTGGACCCTGCCCAACAGAATTTAGAGGAGGTAAACGCTGAATACAATCATCTTGAAGTTGCAGACAGTGAGGAGCCAATTAGAGAAGCTGCAGCATCTGGGATTGATGATAGTTGTGCAAGTTCATGTGAAAGGAAATCCGCGTCTCTTGATTGCCAGTCTATTTTACCACTTTCAACTGCCATTGGGATGGCAAAAACGTTGCAATTACTGGATCTTAGCAATAATGGTTTTTCTGCCCAGGAGACTGAAACAATGTTTGGTGCATGGTCAACTTCGAGAACTGGTTTGGCCCAAAGACATATTAAGGACAACATAGTACATCTATTTGTAAAGGGGACGAAGTGTTGTGTGAGACCCTGCTGCAAGAAGGATTAG 4167 40.44 MKSKYDSQAQRRNPQILCNFQAYTSRYICSNPKRQIQSPTFIGTALTGMTRDGVQFDAAKRSYRNSKAEGNRHEEAKWANVIGNILKNRGEYVKALKWFRIDYDVSVKYLPQKHMLATCQSLGEVYLRLEHFKDALIYQKKHLELAKDANDLVEQQRANTQLGRTYHELFLKSDDDHFSVRNAKKYFKAAMERAKFLKDHPPKIGCSFLKEYIDAHNNLGMLEMDLDNLEGAKKILTKGLEICDEEEVDEDDDGRSRLHHNLGSVYMELRMWDQAKKHIEKDIIICKNIGHCQGEAKGYINLGELHYRVQKYDEAIHCYRKALHLAKSMEDEDALARQIDQNINTVKEAVQVMVALRKEEQNLKKLMREMVTARGTPRERRCLLQQNASLDCLIEKSSTIFAWMQHLEFAKRKKRVASELCDKEKLSDSYLAIGESYQKLRKFTKSIKWYVKSWEVYKSIGNLEGQALAKINIGDVYDCDGKWTEALDAFEESYRIALEAKLPSVQLSALENMHYSHMIRFDNVEEARRLQSQIDQLKEKTKSGNETKFVAEDCCSETDSEEALSDIPSNECLSETRKSCNSRFNSSKSLADLEEPNDPVTFTSSLKRHESSPKMKSIDMEKYNASSNPSEFSPKSLSQSAGSQQTTIGRKRVRVILSDDEGEDEMIDFSKSRPHLCRGENSATSDENKNKQCSGNIAAEIKEGSVTTSKHASRSCEDIEESTGSYKYKSRIVASQNDKVFGTQNAEEIFRSDSAASGSKFEVDISENLLHKYNATKLNPSEQGECVTFKIDNKLIHIEIASFGDMLTIESAKEELACIYYLQLPFEKRSEGLLPVIQHISCDGRTLENLEFLKPYGHERNLLFDAVDVLLFTMGLFADRVNLMKTSFYTLTGWVSKPLIKLYIDYCKELSETPNMKLLKKLYNLEASDDEIAVPDCDLQDLSIRNGTMEKIQQVFKQSSQTHDLTLDLHCNRFGPTALFQICACPILFTRLEVLNISGNRLTDACGSYLSTILKNCKGLWSLNIERCSITSRTIQKVTDALEVGASLEKLYIGYNSISGNALSSLFVKLTALNRFTSLSLSGLKLSKPVLEGLLQLIKSLGLSGLMLGSTGIGDDAALEITESFSGSEELVKLDLAYCGLTSKYLVKFGGCISIIQRIHELNLSGNAIMQEGCNAVSSLIANPQCGLKVLLLNKCQLGLDGVVQIIQSVAGNYYLEELNLADNVDLDKHALQCNITEKESKELKQPCHDISKPQGLTCSIEELDPAQQNLEEVNAEYNHLEVADSEEPIREAAASGIDDSCASSCERKSASLDCQSILPLSTAIGMAKTLQLLDLSNNGFSAQETETMFGAWSTSRTGLAQRHIKDNIVHLFVKGTKCCVRPCCKKD 1388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7506016 7520105 + Carg10550-RA Car03g00971 145023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00971 1388 Coils Coil 1264 1284 - -
Car03g00971 1388 Pfam Tetratricopeptide repeat 214 242 IPR019734 GO:0005515
Car03g00971 1388 ProSiteProfiles TPR repeat region circular profile. 296 325 - -
Car03g00971 1388 Coils Coil 349 376 - -
Car03g00971 1388 MobiDBLite consensus disorder prediction 621 650 - -
Car03g00971 1388 Pfam Tetratricopeptide repeat 429 498 - -
Car03g00971 1388 Pfam Tetratricopeptide repeat 256 327 - -
Car03g00971 1388 ProSiteProfiles TPR repeat profile. 296 329 IPR019734 GO:0005515
Car03g00971 1388 MobiDBLite consensus disorder prediction 589 650 - -
Car03g00971 1388 Coils Coil 527 547 - -
Car03g00971 1388 MobiDBLite consensus disorder prediction 589 608 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00971 - - - bhj:120073724 2344.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1265 Blo04g00969 . . . Bpe15g00397 . . . . . Cma03g01081 . Car03g00971 . Sed10g0490 . Cpe10g00348 Bhi03g01379 Tan03g1329 Cmetu08g0165 . Hepe04g1126 . . Cla01g01530 Cam01g1598 Cec04g1243 Cco04g1312 Clacu01g1623 Cmu01g1509 Cre04g1188 . . . . Lsi01g01135 . . Cme08g01069 . . . Bda14g01059 . . Bma03g01034 . . Cmo03g01070 . . . . . . . . . . . . . . . . . . . . . . Csa06g02797 Chy02g01038 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011042 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00971 Car_Chr03 FPKM 11.697813 13.770494 19.796541 21.448727 9.471494 10.328162 9.261401 31.244879 27.840822 30.586847