Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00975 ATGCTGAGCTCTGATGGAGATGCAGATGTTTTCTTCGACTCGGAAGATTACTTGCCATTGGAGGAGTCCTTGGTAACCGAAGAAGTCGATGCGAGCAAGTCGGGATATGAAATATGGATGAGAGAGCCTCAGAGCATTAAGAAGAGAAGGGAATATTTTCTTCAAGAAGTTGGTTTGAATGAATTTGCATCTTCTTCAAGTACTCGTACACAGGATTCAGAGATTGAATCTAGTTGTTCATCAGGGAGGATAGAATTGGACAGACTCACAGAGTGTAGTGGAGCTGTTTCAAGCTCTGACTATGCACCTAGCTGTAATGTAGAAGGCAATGATTCAGTAGTACACCACAATGATATGCCAAGTGCTGAATTCAGCAACGAGGCAAACGAGACAAACGAGGCAACCAGTCGACCATCTTCTGTTTCCAACTCCAGCTTTCAACGGTGCCAAGGTGAAGCTAACGTCGAAGCTTGCAAGGATATCGATGCGAGGAAAAAGAAGATACTGACTTGGTGGAAATCCTTAAAAAACAAGGCGTCAAGACTACGAGCTACGGAGTTTTCTGAGGAATCGAAATCAAATCCTGCGAAATCCGAAAGTTGCAGAATGAAGGTGTGCCAAAACAAAAAGAAGTGTTCAGAATTTAGTGCATTGTATATGAGACAGCAGATTTGTGCTCACAAGGGCTTGATTTGGACAATGAAGTTTAGTCCAGACGGGAAGTATTTGGCAAGCGGAGGAGAAGACGGAGTCGTTCGCATTTGGCGTGTAACACGTACAAATGCCTCTAGTGAGTTTTTAGCAAATGATGCCACAAGAGAAGGGAAGTCTAGTTTCAGCAGTAAACCGTTGAGATTTGCCACTGTTGTCATTCCTGCAAAGGTTTTTCAGATAGATGAGTTGCCAGTACAAGAATTCCATGGACATTCAAGTGATGTCTTGGATATAGCTTGGTCTACTTCAAACTGTCTTCTTTCATCCTCAAAGGATAAAACCGTGCGCTTGTGGCAAGTTGGTTCAGATCAATGTCTCAATGTTTTCCACCATAAAAACTACGTTACTTGTATCCAATTCAATCCAATGGATGAAAACTACTTCGTCAGTGGCTCAATCGATGGAAAAATTCGGATTTGGGGTGTCTTGAAGCAGCGTGTGGTCGATTGGGCTGATATCCGAGATGCAATTACCGCGATATCTTATCAACCAGATGGGAAGGGGTTTGCTGTTGGTTCTATCACTGGCAGCTGCCGTTTCTACAAAACATCAGATGATTATATCAATCTGGATGAACAGATCAATATTGGCGGTAGAAATAAAGCCTCGGGTAAAAGGATCACTGGCATTCAGTTTTTCGGAGAGAACTCTCAAAGAGTGATGATCACTTCGGAAGACTCTAAAGTACGCATATTTGAAGGAACCAAAATCGTCGGCCAATACAAAGGTCTATCGAAGTCGGGTAGTCAGATGTCTGCTTCCTTTACAGAAAATGGAAAACATATAGTATCTGTTGGAGAGGACTCTCGTGTATATATGTGGAACTATGATAGCGTTCGTCTTTCGTCGACGAACGAGACGAAATCTCAGCAGTCTTGTGAGCATTTCTTTTCTGATGGTGTGTCTGTTGCTATACCATGTCCTGGCACTGGAACTGAACCAAAGTGCTTGGGTAACAGCCAACCACAGTTGTCACAGAGATGGGATAACCAAGGAGATGCCAGTGGTGTGGAATGTTTTTCGTTCAGTAATTGGTTCTCTGCCAATGGTCTGTGCCGAGGTTCTGCAACATGGCCAGAAGAGAGACTACCTCTCTGGGATTTACCAGTTGCAGAAGATGAACACCAAGATTGTCATCAAAAGAAACTAAATGGCCATAACGGCGACGCCCACGACCAAGGATCTCGACTCGAAACATGGGGCCTTGTGATTGTCGTGGCTGGATTAGATGGAACTATAAAGACATTCCACAACTATGGATTGCCCATCAAGCCTTCCAAAAGCAAAAGAGGTTTCAGAATATCAGAAAACATGGCATTTCATGTGGTTGATTCTTTTTCCTGTTTGTATCTTCCAACGGAAAAGCCTTTCTATTTTTTTTATTTGTTCTAA 2106 43.02 MLSSDGDADVFFDSEDYLPLEESLVTEEVDASKSGYEIWMREPQSIKKRREYFLQEVGLNEFASSSSTRTQDSEIESSCSSGRIELDRLTECSGAVSSSDYAPSCNVEGNDSVVHHNDMPSAEFSNEANETNEATSRPSSVSNSSFQRCQGEANVEACKDIDARKKKILTWWKSLKNKASRLRATEFSEESKSNPAKSESCRMKVCQNKKKCSEFSALYMRQQICAHKGLIWTMKFSPDGKYLASGGEDGVVRIWRVTRTNASSEFLANDATREGKSSFSSKPLRFATVVIPAKVFQIDELPVQEFHGHSSDVLDIAWSTSNCLLSSSKDKTVRLWQVGSDQCLNVFHHKNYVTCIQFNPMDENYFVSGSIDGKIRIWGVLKQRVVDWADIRDAITAISYQPDGKGFAVGSITGSCRFYKTSDDYINLDEQINIGGRNKASGKRITGIQFFGENSQRVMITSEDSKVRIFEGTKIVGQYKGLSKSGSQMSASFTENGKHIVSVGEDSRVYMWNYDSVRLSSTNETKSQQSCEHFFSDGVSVAIPCPGTGTEPKCLGNSQPQLSQRWDNQGDASGVECFSFSNWFSANGLCRGSATWPEERLPLWDLPVAEDEHQDCHQKKLNGHNGDAHDQGSRLETWGLVIVVAGLDGTIKTFHNYGLPIKPSKSKRGFRISENMAFHVVDSFSCLYLPTEKPFYFFYLF 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7543895 7547031 + Carg10546-RA Car03g00975 145027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00975 701 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 306 338 - -
Car03g00975 701 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 346 378 - -
Car03g00975 701 MobiDBLite consensus disorder prediction 96 145 - -
Car03g00975 701 Pfam WD domain, G-beta repeat 342 378 IPR001680 GO:0005515
Car03g00975 701 Pfam WD domain, G-beta repeat 302 336 IPR001680 GO:0005515
Car03g00975 701 Pfam WD domain, G-beta repeat 226 255 IPR001680 GO:0005515
Car03g00975 701 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 378 IPR001680 GO:0005515
Car03g00975 701 ProSiteProfiles Trp-Asp (WD) repeats profile. 490 522 IPR001680 GO:0005515
Car03g00975 701 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 265 IPR001680 GO:0005515
Car03g00975 701 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 257 - -
Car03g00975 701 MobiDBLite consensus disorder prediction 122 145 - -
Car03g00975 701 ProSiteProfiles Trp-Asp (WD) repeats profile. 306 346 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00975 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101207772 1062.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car03g00975 Car07g00777 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00975 Car-Chr3:7543895 Car15g00952 Car-Chr15:6943536 2.82E-129 dispersed
Car03g00975 Car-Chr3:7543895 Car07g00777 Car-Chr7:4068641 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00975 Car_Chr03 FPKM 0.0 0.0 0.0 0.0 12.604224 0.0 13.832584 0.0 0.0 0.0