Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00980 ATGGAGCCCCATCACCTCTCAAACCCTTCTCCCCATCTCCATCACTCCGCCATGGAAGACCATCATATCCTTCACCGTCATCACCACGTCCACGTCCACGACCCTGACCCTGACCCTGACCCTGATTCCATTTGGTCGTCGTTGTTGCCTTTTCATCTCCCCGACCCTCATCAACAATTCCCTAGCTCCTCAACCCACCTCTTGATCAGCTACGCTACTCCGAGTTCTAGGGTAGATAATGATGAAGAGCCGGAAGAAGAGCTTGGTGCCATGAAAGAGATGATGTATAAGATCGCCGCGATGCAACCGGTGGATATCGATCCTTCGACTATTCGAAAGCCTAAGCGTCGAAATGTACGGATTAGCGATGACCCGCAAAGCATTGCAGCTCGTCTTCGACGAGAGAGGATCAGTGAGAAGATCAGAATTCTTCAAAGGCTTGTGCCTGGTGGGACGAAGATGGACACAGCTTCAATGCTGGATGAAGCAATTCGCTATGTCAAATTCTTAAAGAGGCAAATCCGGTTGCTGCAGTCAAGTGATCAGCCGCAACAGCCAAGCACTGACGGCGGAGCCGCCGCTGGAGGGTGGCCTCTTACATTCCATAAGGCTGATGGCTCAGCCTCCTCGTCCACGTCCATGGAGACTACGCCTGCCATTATTACACCATCAGGATGGTGA 681 52.13 MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDSIWSSLLPFHLPDPHQQFPSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7568044 7568816 + Carg10541-RA Car03g00980 145032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00980 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Car03g00980 226 Pfam Helix-loop-helix DNA-binding domain 130 170 IPR011598 GO:0046983
Car03g00980 226 MobiDBLite consensus disorder prediction 178 226 - -
Car03g00980 226 MobiDBLite consensus disorder prediction 204 226 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g00980 Car07g00781 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00980 Car-Chr3:7568044 Car05g00151 Car-Chr5:762656 4.58E-37 dispersed
Car13g00357 Car-Chr13:6184768 Car03g00980 Car-Chr3:7568044 1.22E-13 dispersed
Car18g00491 Car-Chr18:3531419 Car03g00980 Car-Chr3:7568044 7.49E-13 dispersed
Car19g00731 Car-Chr19:8264777 Car03g00980 Car-Chr3:7568044 1.33E-12 dispersed
Car02g00402 Car-Chr2:3100912 Car03g00980 Car-Chr3:7568044 2.92E-46 wgd
Car03g00980 Car-Chr3:7568044 Car07g00781 Car-Chr7:4096880 5.38E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3183 PF00010 HLH 1.40E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00980 - - bhj:120073523 302.753