Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00989 ATGTGGTTTATCATTTTAGCGTTATCTCTGTTGAACTACCCATCGAGTGAGGGACATTTCTATAGCTCACACACTAATCTCTATCCTTTTTCCGCCATGGCTTTCTCTGCATCTCTTTCGCACAACTCTTTCTCATGCCTCACTCAGTTCCCACAAAGTTTTAGAAGAAACCCACAAAGTTTTAGAAGAAACCCACTTCGTTTTAATCCCATTCGAGCCCTAAAATCCACTGATCCGGAGAATAAGGCATCGGAGACCAAAACCCAGCAGCCCCCCATGGCTGAACCTTCAACTTCAAGCTCCCCCGCCGCCTCTCCCAAGGTTCTAAAGAAGCCCGTCTATTCGATGAAGAAGGGTCAGATTGTGCGAGTTGATAAAGAGAAGTATCTTAATAGCGTTAATTATCTGTCTGTTGGGCATCCACCTTATTACAAGGGCTTGGATTATATTTACGAAGACCGCGGCGAGGTATTGGATATTCGCATTTTCGAGACGGGGGAGTATGCACTTATTGCATGGGTTGGTGTCCCAACTGCACCAGCTTGGCTGCCCACTGACATGCTTATAAAGTCGGAGAAACTCAACTACGAAAGACTGTAA 600 45.5 MWFIILALSLLNYPSSEGHFYSSHTNLYPFSAMAFSASLSHNSFSCLTQFPQSFRRNPQSFRRNPLRFNPIRALKSTDPENKASETKTQQPPMAEPSTSSSPAASPKVLKKPVYSMKKGQIVRVDKEKYLNSVNYLSVGHPPYYKGLDYIYEDRGEVLDIRIFETGEYALIAWVGVPTAPAWLPTDMLIKSEKLNYERL 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7620477 7622884 - Carg10531-RA Car03g00989 145041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00989 199 MobiDBLite consensus disorder prediction 72 108 - -
Car03g00989 199 MobiDBLite consensus disorder prediction 83 105 - -
Car03g00989 199 Pfam Cyanobacterial and plant NDH-1 subunit O 116 190 IPR020905 GO:0005886|GO:0016655
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00989 - - - cmos:111453390 368.622
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1303 Blo04g00954 . . . Bpe15g00413 . . . . . Cma03g01098 . Car03g00989 . Sed14g0233 . Cpe10g00334 Bhi03g01343 Tan03g1302 Cmetu08g1462 . Hepe04g1108 . . Cla01g01511 Cam01g1579 Cec04g1223 Cco04g1292 Clacu01g1605 Cmu01g1492 Cre04g1171 . . . . Lsi01g01156 . . Cme08g01089 . . . Bda14g01044 . . Bma03g01019 . . Cmo03g01083 . . . . . . . . . . . . . . . . . . . . . . Csa06g02775 Chy02g01059 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011041 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00989 Car_Chr03 FPKM 1.994444 1.859737 1.390205 1.082989 15.765062 15.327787 14.263476 1.290853 0.9529 1.308748