Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00998 ATGAGGGAAGAACACTCCAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACTCCCGATCTAGCTTTGGCTTTTGATATTCAGAATTCCAGTAATACCAGTCCGCCCTTGCCCTGCCCATCTCCGCCGCTTTCGAATCCTCTCCCTGGCTCCGGCAATGGAATTGCGCCGCCCAACTCGGCGGATTTCGGTGATTCCGCCGATTTGGGTTCTGGTGCTGCTAGCGACGAACCGGCTCGAACCCTCAAGCGGCCGCGTCTCGTTTGGACACCTCAACTCCATAAGCGGTTCGTCGATGCTGTTGCTCATTTGGGTATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTTGCTAGTCATTTGCAGAAGTACCGCCTCTATCTCAAACGGATGCAGGGCTTGTCCAGCGGCGGCGGCGGCGGTGGTGGTGGTGGTGGGTTGGTTGCTTCCACGGACCCCACTGACCATTTGTTCGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCAGCTCGCTCCACTTCAGACCATTTCTTGCCCTTTGTTCCAATGGCCACTTTACAGCAACACCACCATCACCAGCAGCATATGGCTGCTGCTGCTGCTGCTGCTGCTGTCGCCGGGCATCCACAGCTCCAGCCGTCATATCATCGACAAGTCGGGCATTTCGGGTCGCCCCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAATCCCAACCAGTCCATAGAATGGGTGCACCAGTGCATAACTCAATTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCAATGGTGGAAGAAAAGTTCTCACCTTATTCCCTACTGGGGATGATTGA 918 53.16 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNSSNTSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGGGLVASTDPTDHLFASSPVPPHLLHSARSTSDHFLPFVPMATLQQHHHHQQHMAAAAAAAAVAGHPQLQPSYHRQVGHFGSPPNGQFEHPFLARQSQPVHRMGAPVHNSIPNYIEDLESANANGGRKVLTLFPTGDD 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8012189 8013106 + Carg28068-RA Car03g00998 145050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00998 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Car03g00998 305 MobiDBLite consensus disorder prediction 1 25 - -
Car03g00998 305 MobiDBLite consensus disorder prediction 40 91 - -
Car03g00998 305 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Car03g00998 305 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00565 Car-Chr2:4340027 Car03g00998 Car-Chr3:8012189 6.29E-36 dispersed
Car03g00998 Car-Chr3:8012189 Car07g01077 Car-Chr7:6393751 3.82E-159 dispersed
Car03g00998 Car-Chr3:8012189 Car14g00453 Car-Chr14:2385588 2.63E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3184 PF00249 Myb_DNA-binding 2.30E-08 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00998 - - cmax:111467241 530.791