Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00998 ATGAGGGAAGAACACTCCAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACTCCCGATCTAGCTTTGGCTTTTGATATTCAGAATTCCAGTAATACCAGTCCGCCCTTGCCCTGCCCATCTCCGCCGCTTTCGAATCCTCTCCCTGGCTCCGGCAATGGAATTGCGCCGCCCAACTCGGCGGATTTCGGTGATTCCGCCGATTTGGGTTCTGGTGCTGCTAGCGACGAACCGGCTCGAACCCTCAAGCGGCCGCGTCTCGTTTGGACACCTCAACTCCATAAGCGGTTCGTCGATGCTGTTGCTCATTTGGGTATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTTGCTAGTCATTTGCAGAAGTACCGCCTCTATCTCAAACGGATGCAGGGCTTGTCCAGCGGCGGCGGCGGCGGTGGTGGTGGTGGTGGGTTGGTTGCTTCCACGGACCCCACTGACCATTTGTTCGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCAGCTCGCTCCACTTCAGACCATTTCTTGCCCTTTGTTCCAATGGCCACTTTACAGCAACACCACCATCACCAGCAGCATATGGCTGCTGCTGCTGCTGCTGCTGCTGTCGCCGGGCATCCACAGCTCCAGCCGTCATATCATCGACAAGTCGGGCATTTCGGGTCGCCCCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAATCCCAACCAGTCCATAGAATGGGTGCACCAGTGCATAACTCAATTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCAATGGTGGAAGAAAAGTTCTCACCTTATTCCCTACTGGGGATGATTGA 918 53.16 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNSSNTSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGGGLVASTDPTDHLFASSPVPPHLLHSARSTSDHFLPFVPMATLQQHHHHQQHMAAAAAAAAVAGHPQLQPSYHRQVGHFGSPPNGQFEHPFLARQSQPVHRMGAPVHNSIPNYIEDLESANANGGRKVLTLFPTGDD 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8012189 8013106 + Carg28068-RA Car03g00998 145050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00998 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Car03g00998 305 MobiDBLite consensus disorder prediction 1 25 - -
Car03g00998 305 MobiDBLite consensus disorder prediction 40 91 - -
Car03g00998 305 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Car03g00998 305 MobiDBLite consensus disorder prediction 1 18 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00998 - - - cmax:111467241 530.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00565 Car-Chr2:4340027 Car03g00998 Car-Chr3:8012189 6.29E-36 dispersed
Car03g00998 Car-Chr3:8012189 Car07g01077 Car-Chr7:6393751 3.82E-159 dispersed
Car03g00998 Car-Chr3:8012189 Car14g00453 Car-Chr14:2385588 2.63E-119 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g01696 CST 12 271 G2-like Transcription Factor Family AT3G24120 60.1 1.2e-73 273.9
Car10g01051 . 16 203 G2-like Transcription Factor Family AT3G24120 53.0 9.5e-42 167.9
Car19g00887 . 18 178 G2-like Transcription Factor Family AT3G24120 58.5 8.1e-41 164.9
Car06g01068 CST 12 101 G2-like Transcription Factor Family AT3G24120 87.0 1.1e-40 164.5
Car19g00157 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.1e-37 154.5
Car07g00322 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Car20g00562 . 92 236 G2-like Transcription Factor Family AT5G44190 66.2 6.8e-47 185.3
Car01g00304 . 189 413 G2-like Transcription Factor Family AT5G16560 50.4 2.3e-43 173.7
Car19g00172 . 150 352 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Car12g00477 CCT 4 143 G2-like Transcription Factor Family AT5G42630 58.3 8.2e-38 154.5
Car04g02002 . 40 278 G2-like Transcription Factor Family AT1G25550 52.0 6.6e-45 178.3
Car04g02002 . 40 278 G2-like Transcription Factor Family AT3G25790 51.6 1.5e-38 157.1
Car03g00998 . 1 305 G2-like Transcription Factor Family AT5G05090 54.1 3.8e-74 275.4
Car07g01077 . 1 299 G2-like Transcription Factor Family AT5G05090 54.5 1.2e-72 270.4
Car14g00453 . 1 279 G2-like Transcription Factor Family AT5G05090 58.2 1.1e-70 263.8
Car06g00019 . 1 286 G2-like Transcription Factor Family AT5G05090 52.3 2.4e-68 256.1
Car14g01696 CST 12 315 G2-like Transcription Factor Family AT4G13640 57.3 2.4e-61 233.0
Car14g01696 CST 12 271 G2-like Transcription Factor Family AT3G24120 60.1 1.2e-73 273.9
Car10g01051 . 16 203 G2-like Transcription Factor Family AT3G24120 53.0 9.5e-42 167.9
Car19g00887 . 18 178 G2-like Transcription Factor Family AT3G24120 58.5 8.1e-41 164.9
Car06g01068 CST 12 101 G2-like Transcription Factor Family AT3G24120 87.0 1.1e-40 164.5
Car19g00157 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.1e-37 154.5
Car07g00322 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Car06g01472 . 47 278 G2-like Transcription Factor Family AT1G69580 50.4 2.7e-40 163.3
Car19g00887 . 1 387 G2-like Transcription Factor Family AT1G79430 51.7 3.0e-82 302.8
Car10g01051 . 1 352 G2-like Transcription Factor Family AT1G79430 54.6 2.1e-80 296.6
Car02g00488 . 1 209 G2-like Transcription Factor Family AT1G79430 63.0 1.5e-54 210.7
Car07g00323 . 66 274 G2-like Transcription Factor Family AT2G01060 66.7 8.6e-54 207.6
Car07g01077 . 1 299 G2-like Transcription Factor Family AT3G10760 62.5 2.4e-89 326.2
Car03g00998 . 1 305 G2-like Transcription Factor Family AT3G10760 60.1 1.7e-87 320.1
Car06g00019 . 1 286 G2-like Transcription Factor Family AT3G10760 58.1 3.9e-84 308.9
Car14g00453 . 1 279 G2-like Transcription Factor Family AT3G10760 58.6 7.6e-80 294.7
Car07g01077 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 6.5e-60 228.0
Car14g00453 . 1 195 G2-like Transcription Factor Family AT2G40970 59.9 4.2e-59 225.3
Car03g00998 . 1 204 G2-like Transcription Factor Family AT2G40970 59.0 5.5e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3184 PF00249 Myb_DNA-binding 2.30E-08 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car03g00998 Car_Chr03 FPKM 34.79388 40.705849 35.934761 35.411228 20.891466 15.610387 23.266134 36.672829 39.148567 40.544472