Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g01008 | ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGGAGTCGTCATCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTCCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA | 516 | 54.46 | MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD | 171 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 8393614 | 8394129 | - | Carg10515-RA | Car03g01008 | 145060 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g01008 | 171 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - | |
| Car03g01008 | 171 | Pfam | Ring finger domain | 106 | 148 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g01008 | Car-Chr3:8393614 | Car05g00413 | Car-Chr5:2348747 | 2.81E-38 | dispersed | |
| Car14g00339 | Car-Chr14:1655459 | Car03g01008 | Car-Chr3:8393614 | 7.19E-54 | wgd | |
| Car03g01008 | Car-Chr3:8393614 | Car07g00808 | Car-Chr7:4281919 | 7.29E-78 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g01008 | - | - | csv:101218618 | 278.485 |