Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01008 ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACTCCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGGAGTCGTCATCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTCCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA 516 54.46 MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAGVVIDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 8393614 8394129 - Carg10515-RA Car03g01008 145060
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car03g01008 171 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Car03g01008 171 Pfam Ring finger domain 106 148 IPR001841 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01008 Car-Chr3:8393614 Car05g00413 Car-Chr5:2348747 2.81E-38 dispersed
Car14g00339 Car-Chr14:1655459 Car03g01008 Car-Chr3:8393614 7.19E-54 wgd
Car03g01008 Car-Chr3:8393614 Car07g00808 Car-Chr7:4281919 7.29E-78 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01008 - - csv:101218618 278.485