Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01015 ATGCGTGGCGGCTCTCGAGCTCCGAACAGGTCGGAGCCACTGCCCCACTCGCAAACTGCTCAGATCCTGCCGCCTCTTAAGCGTCAGTTAGCTTTCGAGTCGAATAAGCCGCTGCGTGCTTCTTCCAATTCTTTTGATCAAGAACCTGATTCCATCGCTGTTAAACCTCTCAAACCAAAGCAGACAGGTGTTATGTATACCAACGTGGTTGAATCAAATGACTGCATTCAAGATCAGGGATTTTCTAAAGATTCTCTAAGTTCTGTTCAGACACCCGTATCTGCAAAAGGAGGAAGGATGTACAATAAGTCAAAAACTTCAAGGAGAATGACATCTGGGACTCAAACACCTATCTCAGACACTAGCATTTATTCTCCTCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTAAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAATACACAAGTTCCAGGAAATGTGGATAGTGATACTTCTAGGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAAATGATAAGATAAGAACATTGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATCTCCAAAAATGGCTCTTTGTGACAGAAGAAGACATTAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCGCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACGATGGGTCCTATCGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGGTGAATGTGGTCAAGCCACCCAGGAACTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCCATCAGGGAGAGTAGTAGAGACGAAATAGAGCCTCAAGCTCACCTGTCCCAATACAGCAGTAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGGGGAATGATGAAGATTATTCCTTCAGAATTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTATATTGCATGGGATGAATCGCATATGGTTTCTCAGGACTTTTTGATATCTGATGTCAGTGCCCAAAGGCCAAGACCCGGAAGCCCACATTCGGAGACAGTCGAAGCACCATCTGATGTTAACTCAAGACAGAGGAAATAG 1383 41.79 MRGGSRAPNRSEPLPHSQTAQILPPLKRQLAFESNKPLRASSNSFDQEPDSIAVKPLKPKQTGVMYTNVVESNDCIQDQGFSKDSLSSVQTPVSAKGGRMYNKSKTSRRMTSGTQTPISDTSIYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNTQVPGNVDSDTSRLQVDVENLSFEERRLNDKIRTLQERLRNLSEDENLQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNVVKPPRNFLHASSSGSNEHLATEAIRESSRDEIEPQAHLSQYSSSCDVNGSNEFPGGMMKIIPSEFDNDADYWLLSDAEVSITDMWRTDYIAWDESHMVSQDFLISDVSAQRPRPGSPHSETVEAPSDVNSRQRK 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8427955 8434509 + Carg10508-RA Car03g01015 145067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01015 460 MobiDBLite consensus disorder prediction 1 24 - -
Car03g01015 460 MobiDBLite consensus disorder prediction 434 460 - -
Car03g01015 460 MobiDBLite consensus disorder prediction 87 123 - -
Car03g01015 460 Coils Coil 219 246 - -
Car03g01015 460 Pfam E2F transcription factor CC-MB domain 215 315 IPR032198 GO:0046983
Car03g01015 460 MobiDBLite consensus disorder prediction 344 370 - -
Car03g01015 460 Pfam E2F/DP family winged-helix DNA-binding domain 136 199 IPR003316 GO:0005667|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01015 Car07g00815 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01015 Car-Chr3:8427955 Car05g00249 Car-Chr5:1391206 2.46E-73 dispersed
Car02g01097 Car-Chr2:7609956 Car03g01015 Car-Chr3:8427955 4.51E-162 wgd
Car20g00133 Car-Chr20:743144 Car03g01015 Car-Chr3:8427955 5.71E-74 wgd
Car03g01015 Car-Chr3:8427955 Car07g00815 Car-Chr7:4316011 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3186 PF16421 E2F_CC-MB 2.10E-32 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01015 K06620 - csv:101212480 697.967