Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01050 ATGGCGGAAGAGCACCGATGCCAAGCACCTGAAGGCCACCGTCTCTGCGCCAATAATTGCGGCTTCTTCGGTAGCCCAGCTACCATGGATCTCTGCTCCAAATGTTACAGAGACATCCGCCTTAAAGAACAAGAACAAGCCTCCACCAAATCCACCATCGAAGCCGCTCTCTCGGCCTCATCATCTCCTTCTCCCTCCTCTTCCTCAATCGATCCTCCTCCCGTTCCTCCTGTTGTCGCCGTGTCCTCGCCGGACGCCACCACAGGACTGACCATCCCCGCCCTTGCGGCGGTCGGATCTGAGGCCACGAACCAACCGAACCCGAACTCGACTCCGAACCCGAACCGTTGTTCATCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAGATGCAGATGCGGAATCACCTTCTGTGGAGCTCATAGGTACCCGGAGAAACACGGGTGCACCTTCGATTTCAAGTCAATCGGAAGGGAGGAGATCGCTAGAGCGAACCCCATCGTCAAAGCCGATAAACTGGAGAGGATTTGA 531 56.31 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDIRLKEQEQASTKSTIEAALSASSSPSPSSSSIDPPPVPPVVAVSSPDATTGLTIPALAAVGSEATNQPNPNSTPNPNRCSSCRKKVGLTGFRCRCGITFCGAHRYPEKHGCTFDFKSIGREEIARANPIVKADKLERI 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8588015 8588545 - Carg10473-RA Car03g01050 145102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01050 176 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Car03g01050 176 ProSiteProfiles Zinc finger AN1-type profile. 111 157 IPR000058 GO:0008270
Car03g01050 176 Gene3D - 1 71 - -
Car03g01050 176 PANTHER BNAC06G14100D PROTEIN 1 176 - -
Car03g01050 176 Pfam AN1-like Zinc finger 117 153 IPR000058 GO:0008270
Car03g01050 176 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Car03g01050 176 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Car03g01050 176 Gene3D - 96 172 IPR035896 -
Car03g01050 176 MobiDBLite consensus disorder prediction 46 84 - -
Car03g01050 176 SMART AN1_Zf_4 117 154 IPR000058 GO:0008270
Car03g01050 176 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 58 - -
Car03g01050 176 MobiDBLite consensus disorder prediction 48 66 - -
Car03g01050 176 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 176 - -
Car03g01050 176 SUPERFAMILY AN1-like Zinc finger 101 171 IPR035896 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01050 Car-Chr3:8588015 Car20g00144 Car-Chr20:794304 6.35E-60 dispersed
Car03g01050 Car-Chr3:8588015 Car07g00846 Car-Chr7:4478844 2.10E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01050 - - bhj:120073734 281.182