Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01056 ATGCGTTCACCTCCTTTGCATTCTTCACAATCCTATCACTGGGCTCCATTGTGTGCGCCCTTTCAATTCACTTCGCCTCAGCGAGTGGAGTTAGTAATGGGAACTGGTACTTGTGAAATTGTTGAAGCAAGGGAAGAAATCAAACCTGTTCAAAGTAAGGTAGGATCTCATCATTCAGATTTCTTATCAAATAAAGATCGAAAACTTTCTGCATTGAAAATTGGATTTAAAGGATCTCTAGAGGATGATATCAATCAGATTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGCTTAGGTCATTCGCAAGTAGAGGTAAATGCACTGAGAAAAAGTACACTAAAGAAGCCGATCACTGTTGGCATACCTCGCTCACCAGGTATTGGTACTTCCGATTCTGGTAGTCTGAAGCAAGCACTTAGGGAACTATGTGTTTCGAAAGCGTCTGAAATGGCTGCTATGAAGAGAGCATCAAAATTGTCTAGCTCTTCAAGAATCTCCGAAGCGGGGCGGATCAAGACATTGTATAATTCAGTTATGGTTGAAGCTACTGAGTCAGGCTCTTCTTCACGCATGGTTGAAATATCTCTGGTTCAAGAGGAAAAGAAATTGAACTTTGAGAAGAGACTTGAGCATGTCCAGGCATCTTCTGTTAAATCTCCGGTTGAAAGTGCTTGTTCCTTTCAGTTGCCTATTGCCAAAACAAAAAATTATAGCGAGGTTGTTACTGTGGAACAAAACGTCAATACCACGTCGTCAAGGAAAGTTGGATCTCAAACATTAAGGGCAGAGCTGGAGAAGGAAGAGGAGTCCGTTACCCCACCATCGTTATCTTCCTGCACTATTGACAAGGTTTTAGAGAAGGAGAAGAAAATTCTTGCTGGAAGCAGGGTAGCAGATAAAGCGGCATCGTCCAAGGCAGGACGAAAAGGTAGGTTGCAAACTGCATCTTCGTCTAAGTTGGGTAGTGGCAATAAGGTTACCAAGTTATCTAGAAGTGCCTCCCGTTCGGTTAAACCCGTTATTAGGAACAAGGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTCAATGATGATACGGATCCTAGTAATAGGAAGTTGATATGTGAGCGATGCCACTGTGCATTGAATGGTGCAGCTAAAGACTCAATGAAGGGCTCTGCATCCCAGTTTAGTGGTCTTGGCAGTGGTGTAAGCATGACGAATTCGAAATCGGGCGTTGGCAAATCAGGCATCTACGGGGATGGCAAGGCTTCTGATGTTAGAGTAAAAAGAAATACAAGGGCACGAGATAAGGGCGAATTTTCTCAAAGCTCAAAAAGTAGTCAAGGTGATTACAGTAGCAGTACGACGAGTATTATAAGTGATGACAGCAATGGTCGTGGATCCAGTAATGGTAACAGACCTCATATGTCGAAAGACGTTAGGTGGGAAGCCATACGCCACGCACAATTGGAGCATGGTGTCCTCAGCTTGCGGCATTTCAATCTTTTAAAGAAGCTTGGTTGTGGGGACATCGGAACCGTGTATCTTGCTGAGCTAACTGGCACTAGTTGCTTATTTGCCATCAAGGTCATGGACAATGAGTTTCTAGCAAGACGGAAGAAAATGCCGAGAGCGCAAACTGAGAGAGAAATACTTAGAATGCTAGATCATCCCTTCCTTCCAACACTTTATGTTCAATTTACTTCTGATAATTTATCATGTCTCGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTTAGGCAGAAGCAGCTAAGCAGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGCGTTATTTATCGAGATTTAAAACCCGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTGTCGCTTAGGTGCACGGTCAGTCCAACGCTCCTGAAGTCGTCATCCTTCAATGCAGACTTGGTGAAAACCTCAGTTCCAGGTAGAGATTCTAGTTGTGTTGAGCCATTTTGCATTGGACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTCTTACCTGCTACAGCCAAAGCAAGGAAATCAAAACCTGACCTCACAACACAGTTCAGGTCATTGCCCCAGCTCATTGCCGAACCCACTGATGCACGATCAAATTCCTTCGTTGGCACTCACGAATATTTGGCTCCCGAGATCATTAAAGGCGAGGGTCATGGAGCTGCAGTCGATTGGTGGACGTTTGGTGTTTTTCTATATGAGCTTCTATATGGTAGAACCCCATTCAAGGGTTCAAACAATGAAGAAACATTAACCAATGTAATCATTCAGAGCCTCAGTTTTCCCGACAGCCCGATCGTTAGTTTCCAAGCAAGAGATCTTATCCGAGGACTGTTGATAAAAGAACCCGAAAATCGATTCGGGACAGAGAAAGGGGCTGCAGAAATCAAACAGCACCCATTCTTCGAGGGGCTAAACTGGGCATTGATCCGTTGTGCAATCCCTCCAGAACTTCCTGACTTATGTGATATGGACATTACAAGCATGATTGCTCAACAAAACAAGTTCAGGTATTTGGAAAGCAAGTCCACTGGAGAACACCTCGAGTTCGAACTGTTTTAG 2682 43.81 MRSPPLHSSQSYHWAPLCAPFQFTSPQRVELVMGTGTCEIVEAREEIKPVQSKVGSHHSDFLSNKDRKLSALKIGFKGSLEDDINQIFESISIKNASKSLGHSQVEVNALRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCVSKASEMAAMKRASKLSSSSRISEAGRIKTLYNSVMVEATESGSSSRMVEISLVQEEKKLNFEKRLEHVQASSVKSPVESACSFQLPIAKTKNYSEVVTVEQNVNTTSSRKVGSQTLRAELEKEEESVTPPSLSSCTIDKVLEKEKKILAGSRVADKAASSKAGRKGRLQTASSSKLGSGNKVTKLSRSASRSVKPVIRNKGLAKKKVKQDLSSPTCSSSTYNAVNDDTDPSNRKLICERCHCALNGAAKDSMKGSASQFSGLGSGVSMTNSKSGVGKSGIYGDGKASDVRVKRNTRARDKGEFSQSSKSSQGDYSSSTTSIISDDSNGRGSSNGNRPHMSKDVRWEAIRHAQLEHGVLSLRHFNLLKKLGCGDIGTVYLAELTGTSCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLSRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVSPTLLKSSSFNADLVKTSVPGRDSSCVEPFCIGPSCQVPCFSPRFLPATAKARKSKPDLTTQFRSLPQLIAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLTNVIIQSLSFPDSPIVSFQARDLIRGLLIKEPENRFGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCDMDITSMIAQQNKFRYLESKSTGEHLEFELF 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8614273 8618166 + Carg10467-RA Car03g01056 145108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01056 893 MobiDBLite consensus disorder prediction 432 449 - -
Car03g01056 893 MobiDBLite consensus disorder prediction 397 422 - -
Car03g01056 893 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Car03g01056 893 MobiDBLite consensus disorder prediction 450 484 - -
Car03g01056 893 MobiDBLite consensus disorder prediction 397 485 - -
Car03g01056 893 MobiDBLite consensus disorder prediction 356 374 - -
Car03g01056 893 ProSiteProfiles Protein kinase domain profile. 509 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g01056 893 MobiDBLite consensus disorder prediction 311 339 - -
Car03g01056 893 MobiDBLite consensus disorder prediction 298 374 - -
Car03g01056 893 Pfam Protein kinase domain 739 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g01056 893 Pfam Protein kinase domain 510 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01056 Car-Chr3:8614273 Car18g00579 Car-Chr18:6510796 0 dispersed
Car08g00214 Car-Chr8:1327638 Car03g01056 Car-Chr3:8614273 5.83E-71 dispersed
Car02g01124 Car-Chr2:7744738 Car03g01056 Car-Chr3:8614273 1.01E-111 wgd
Car20g00154 Car-Chr20:868294 Car03g01056 Car-Chr3:8614273 0 wgd
Car03g01056 Car-Chr3:8614273 Car07g00867 Car-Chr7:4623377 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88740 PF00069 Pkinase 6.90E-36 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01056 - K08286 csv:101210027 1469.91