Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01067 ATGGCAGTCTCACTCCTAAGCTTCTTTCTCCACCACTGCTACACCATCAATCTTCATACTCTCCATGCTACAACTACAACTACACCTACAATTTGGATCATTTTCCTGAAGAAGAACAAGAACAAGACCAAGACCAAGTTGAGTCCGGATCAGTTGGAGTCATTGGAGAGAAGGTTTCAAGAGGAAGTGAAGCTTGATCCTGACAGGAAAATGAAGCTGTCAAAGGAACTTGGGCTCCAACCAAGGCAAATTGCAATTTGGTTCCAAAATAGAAGAGCTCGCTGGAAGACTAAGCAGCTTCAGCATCTCTATGACACCCTCAAGCAAGAATTTGACACCATCTCTAACCAAAAACACACCCTTCAACAACAGGTAATGAAACTAAAGACCATCCTGCTGCTAAGAGAAGAAGCCACCAGGAATCATCAAGGGTCGATGGCTTACACGGACGAAGAGACGGCGGAGAGCACGTCGGTCGGGGTTCGGACCAGTACCAATAATTACATGTACAACAATAAGGTGGAAGGTTTGGTTGAAATATCAGGTTCAGGTCCTCCTCCTCCTCCTCCTCCACTCTGTCTCATTCCTACCTTTGTTTCTCCACCATCGCCCTACAACTATTACTACAATTACAATTACAATTTGGATCAATTTCCTGTGTTAGAGACGAAGAAGCAGGCGGTGGAAAGTGTGGTTGGGGGAGTGGATGAGGAGAAGAAGAAGAAGAACAGGTTGAGTGAGGATCAGTTGGAGAGGTTAGAGAGATGCTTTCAAGAGGAAGGGAAGCTTGAGCCTGATACCAAAATGCAGCTATCAAAGGAACTTGGGCTCCAACCAAGGCAAATTGCTGTCTGGTTTCAAAATAGAAGCGCTCGTTGGAGGACTAAGCAGCTTGAGTATCTCTATGATACCCTCAAACAAGAATTTGACACCATTTCTAAGGAAAAACACACCCTTCAACAAGAGGTGTTGAAGCTAAGAAGTATGCTACGAGAACAAACGATGAGGAATCAAGAGCCGATGGCATACGAGGATGTCTCCGGGGAAGCGACGGTGGAAAGCACGTCGGTTCAGGTCCTCCATTCTGATGGGGTGCTGAGGCTTCTCACCGCCCTTCTTATCCTTAAGTAG 1131 45.98 MAVSLLSFFLHHCYTINLHTLHATTTTTPTIWIIFLKKNKNKTKTKLSPDQLESLERRFQEEVKLDPDRKMKLSKELGLQPRQIAIWFQNRRARWKTKQLQHLYDTLKQEFDTISNQKHTLQQQVMKLKTILLLREEATRNHQGSMAYTDEETAESTSVGVRTSTNNYMYNNKVEGLVEISGSGPPPPPPPLCLIPTFVSPPSPYNYYYNYNYNLDQFPVLETKKQAVESVVGGVDEEKKKKNRLSEDQLERLERCFQEEGKLEPDTKMQLSKELGLQPRQIAVWFQNRSARWRTKQLEYLYDTLKQEFDTISKEKHTLQQEVLKLRSMLREQTMRNQEPMAYEDVSGEATVESTSVQVLHSDGVLRLLTALLILK 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8677389 8686669 + Carg10456-RA Car03g01067 145119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01067 376 ProSiteProfiles 'Homeobox' domain profile. 38 98 IPR001356 GO:0003677
Car03g01067 376 Pfam Homeodomain 239 294 IPR001356 GO:0003677
Car03g01067 376 Pfam Homeodomain 42 96 IPR001356 GO:0003677
Car03g01067 376 ProSitePatterns 'Homeobox' domain signature. 73 96 IPR017970 GO:0000981|GO:0006355
Car03g01067 376 Coils Coil 104 124 - -
Car03g01067 376 ProSiteProfiles 'Homeobox' domain profile. 236 296 IPR001356 GO:0003677
Car03g01067 376 Coils Coil 302 322 - -
Car03g01067 376 ProSitePatterns 'Homeobox' domain signature. 271 294 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01067 Car06g00370 CCT
Car03g01067 Car14g00235 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01067 Car-Chr3:8677389 Car07g00496 Car-Chr7:2483443 1.59E-24 dispersed
Car14g00235 Car-Chr14:1099946 Car03g01067 Car-Chr3:8677389 4.01E-48 wgd
Car03g01067 Car-Chr3:8677389 Car06g00370 Car-Chr6:2036782 1.86E-49 wgd
Car03g01067 Car-Chr3:8677389 Car07g00855 Car-Chr7:4529568 2.69E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3190 PF00046 Homeodomain 1.80E-15 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01067 - - cmos:111433146 280.411