Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01072 ATGGCAGCCGTTGTTCCGCACTCTGCAAACGCCATTTCTGCAGCTTCTCTTCTTCCTTCCACCATCCTTTTCCGCTTTCCTTCTATGCCCATCAATTCTTCACCTTCAACGCCACCGCCGCCACTTTTATCCAAAACTTCTTTATCTCTCTGTAACCCAAAGCCTTGTCACCTCCCACTCAATTCCACATCTCCGACCCATTTCCTAGCCTGCGCACAATCCGCTGTGTCAATTTCAGAACCCCTTTTCGCTTCACGCTCTGTATATAGCTCTACCTCTCCAATTACTTCCGACTTCGATTTGCTTCGCTTATCCACTCGCTATGGTGACGCTGACCTCGCCAGAGCTGTTCATGCTTGTTTTCTCAAGCTCGAGGAAGATGTTTATCTGGGTAATGCTCTAATTGCAGCTTATCTCAGGTTGGGGCTTGTTCGAGATGCTGATAAAGTCTTTTCTGGACTTTCGTGTCCTAATGTGGTGTCTTATTCGGCGATGATTTCTGGGTTTTCCAAGTCGAACCGGGAAGATGAAGCTGTTGAGCTTTTCTTTGCGATGTTGGACTCGGCTTCTACTGGCAGTGTTAAGCCAATGAAGGGCCAACAACTTCACGCTCTTGGATTGAAGGTCGGGCTGGAGTCTCATTTGAGCGTCAGCAATTCGCTTATTGGGTTCTATACTAAATGTGGGAGTGTAGACGATGTAATGAAACTGTTTGAGTCAATGCCAATAAGAGATGTTATTACTTGGACAGGAATGATAACATCATACATGGAATTCGGAAAGTCGGATTTGGCAGTCGAAGTGTTCAATAACATGCCAGAGAGGAATTGTGTCTCTTACAATGCAGTTTTGGCTGGACTTTCTAGGAATGGCGACGGGTCGAGAGCTCTGGAGCTTTTCATCGAAATGTTGGATGAGGGCATGGAAATATCAGATTGCACATTGACTAGCATCATCAATGCTTGTGGGTTGCTCAAGAATTTGAAACTCAGCCAGCAGATTCAAGGCTTCATCATCAAGTTTGGGATTTTGCCAAATTCTTGTATTGAAACAGCATTGGTTGACATGTATACAAGGTTGGGGAGGATGGCGGATGCAGAAAAGATGTTTCATCAGCGTTCATTAGAGAATGACTACACTGCAATGCTAACATCAATGATTTGTGGGTATGCTCGAAACAAGCAACTTAATGAAGCAATCTCTCTCTTTCACTCTGGTCAATCTGAAGGAGCTATTGTCATGGATGAAGTTGTGTCAACGTCAATACTCTCTCTTTGTGGAAGTATAGGTTTTCATGAGATGGGGAAGCAAATGCATTGCCATGCACTTAAATCAGGTCTCATAACTGATACAGGCGTTGGAAACGCAACCGTTAGCATGTACTCCAAGTGCTGGAATATGGACGATGCCGTTCGAGTATTCGACACAATGAACATGCAAGACGTAGTTTCCTGGAATGGTTTGATTTCTGGTCATTTGCTTCATAGACAGGGTGATAAAACCTTGGAAATCTGGAAGAAGATGGAGAAAGCAGGAGTAAAACCTGACAATATTACGTTTGTTTTGGTTATTTCAGCGTACAAACACACTGAATTTGATTTAGTAGATAGCTGCCGTAGCTTATTTTTCTCTATGAAAACCAAGTACAATATCAAACCCACTTCAGAGCATTATGCCTCCTTTATCAGTGTTTTGGGTCGTTGGGGTCATCTCGAAGAAGCTGAAGAAACAATCAGAAGGATACCTTTCGAACCGGGCGTTAATGTCTGGCGCGCTTTGCTTGATAGTTGTAGAATCAACAAAAACGAAAGGCTGGAAAAGCTTGCTGCAAGATGCATACTGGCTGTGGAACCAAAAGATCCATTTACTTACATACTTAAATCGAATCTATACTCTGCATCAGGGAGATGGCATTATTCTGAAAAGGTAAGAGAGGATATGCGGGAGAAAGGATTCAGGAAACACCCAAGTCAGAGTTGGATCATCCATGAGAACAGAATTCATTCATTCTATGCCAGAGACAAGTCTCATCCCCAAGTAAAAGACATTTACAGTGGACTAGACATATTAGTCTTAGAATGTTTAAAAGCTGGTTATGTTCCAGACACGAGTTTTGTTCTTCAAGAAGTAGACGAACATCAAAAGAAGGAATTTTTGTTCTATCACAGTGGGAAATTAGCTGCAACTTTCGGCATTCTAATGACGAGACCAGGACAGCCCGTCCGAATCGTGAAGAGTGTTCGTTTGTGTGGGGATTGCCATACCTTCTTGAAATATGTTTCTATTATTACCAGAAGGAAAATATTCGTCAGGGATACTTCAGGGTTTCATTGCTTTGCAGATGGCCAATGCTCATGTAAAGATTACTGGTAA 2373 42.86 MAAVVPHSANAISAASLLPSTILFRFPSMPINSSPSTPPPPLLSKTSLSLCNPKPCHLPLNSTSPTHFLACAQSAVSISEPLFASRSVYSSTSPITSDFDLLRLSTRYGDADLARAVHACFLKLEEDVYLGNALIAAYLRLGLVRDADKVFSGLSCPNVVSYSAMISGFSKSNREDEAVELFFAMLDSASTGSVKPMKGQQLHALGLKVGLESHLSVSNSLIGFYTKCGSVDDVMKLFESMPIRDVITWTGMITSYMEFGKSDLAVEVFNNMPERNCVSYNAVLAGLSRNGDGSRALELFIEMLDEGMEISDCTLTSIINACGLLKNLKLSQQIQGFIIKFGILPNSCIETALVDMYTRLGRMADAEKMFHQRSLENDYTAMLTSMICGYARNKQLNEAISLFHSGQSEGAIVMDEVVSTSILSLCGSIGFHEMGKQMHCHALKSGLITDTGVGNATVSMYSKCWNMDDAVRVFDTMNMQDVVSWNGLISGHLLHRQGDKTLEIWKKMEKAGVKPDNITFVLVISAYKHTEFDLVDSCRSLFFSMKTKYNIKPTSEHYASFISVLGRWGHLEEAEETIRRIPFEPGVNVWRALLDSCRINKNERLEKLAARCILAVEPKDPFTYILKSNLYSASGRWHYSEKVREDMREKGFRKHPSQSWIIHENRIHSFYARDKSHPQVKDIYSGLDILVLECLKAGYVPDTSFVLQEVDEHQKKEFLFYHSGKLAATFGILMTRPGQPVRIVKSVRLCGDCHTFLKYVSIITRRKIFVRDTSGFHCFADGQCSCKDYW 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8701741 8704461 - Carg10451-RA Car03g01072 145124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01072 790 Pfam E motif 605 661 IPR046848 -
Car03g01072 790 Pfam E+ motif 667 688 IPR046849 -
Car03g01072 790 Pfam DYW family of nucleic acid deaminases 698 790 IPR032867 GO:0008270
Car03g01072 790 Pfam PPR repeat 156 182 IPR002885 -
Car03g01072 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Car03g01072 790 Pfam PPR repeat 219 242 IPR002885 -
Car03g01072 790 Pfam PPR repeat 351 371 IPR002885 -
Car03g01072 790 Pfam PPR repeat 132 152 IPR002885 -
Car03g01072 790 Pfam PPR repeat 458 478 IPR002885 -
Car03g01072 790 Pfam PPR repeat 383 406 IPR002885 -
Car03g01072 790 Pfam PPR repeat 558 580 IPR002885 -
Car03g01072 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Car03g01072 790 Pfam PPR repeat family 276 322 IPR002885 -
Car03g01072 790 Pfam PPR repeat family 481 527 IPR002885 -
Car03g01072 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 188 IPR002885 -
Car03g01072 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 275 IPR002885 -
Car03g01072 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01072 Car-Chr3:8701741 Car18g01000 Car-Chr18:10443025 1.38E-148 dispersed
Car03g01072 Car-Chr3:8701741 Car03g00712 Car-Chr3:6196617 1.61E-136 transposed
Car03g01072 Car-Chr3:8701741 Car14g01239 Car-Chr14:10725196 1.51E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01072 - - csv:101205681 1088.94