Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car03g01078 | ATGACGAAGCCATCCTTCCCATCGACATGCCTGTTGGCATCTCTGCTAAGCCTGCTGTTGCTTATAATCGCCCATGCACACGCCGCGGCCTCGATGGGGCATCGCCCTTACGCGAAAGCGCACAGGGAATTAGGCGCGCGGCTTGTTAAAAAGCATAACAGGCCGCCGTTTAAGCCCGGACCCTTGGAAACGCGCTCCGACGTGGAAAAGGAAGGGTATGGGCTGCAGACGGCGGCATTAAGCATGGCGCTGTTTAACAACGGGCAGAAATGCGGCGCTTGCTTTGAACTCAAATGCATGGACAATCCTGATTGCAAGCCTGGGCAGCCCTCCCTCGTGGTAACCGGCACCAACCACTGTCCACCCAATTACAACGCTGCCAACGACAATGGCGGATGGTGCAATCCCCCCCTCGAGCATTTCGACATAGCCAAGCCTGTTTTCGCCAACCTTGCAGACTACAAGGCCGGCGTCATTCCCATCACTTACCGCAGGGTTCCATGCCAAAAGCAAGGAGGAATTCGCTTCACAATCACTGGAAACCCATACTTCAACGAAGTAATGGTGTGGAACGTGGGAGGAGCTGGGGACATAACGGCTGTCCAAGTCAAGGGCCACCGTAAGCTTAAATGGACCGCCATGTCTCGTCTGTGGGGTCAAAAATGGACCACCAACGCCATGATGGTTGGCGAGTCGCTCACCTTCAGGGTTCGAGCCAGCGATGGCAGATTCTCCACTGCATGGCATGTTGCTCCCGCCAATTGGCAGTTTGGTCAGACATTCGAAGGCAAGAACTTTAAGTAA | 804 | 54.85 | MTKPSFPSTCLLASLLSLLLLIIAHAHAAASMGHRPYAKAHRELGARLVKKHNRPPFKPGPLETRSDVEKEGYGLQTAALSMALFNNGQKCGACFELKCMDNPDCKPGQPSLVVTGTNHCPPNYNAANDNGGWCNPPLEHFDIAKPVFANLADYKAGVIPITYRRVPCQKQGGIRFTITGNPYFNEVMVWNVGGAGDITAVQVKGHRKLKWTAMSRLWGQKWTTNAMMVGESLTFRVRASDGRFSTAWHVAPANWQFGQTFEGKNFK | 267 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 8772489 | 8773622 | - | Carg10445-RA | Car03g01078 | 145130 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car03g01078 | 267 | Pfam | Lytic transglycolase | 77 | 163 | IPR009009 | - | |
| Car03g01078 | 267 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 60 | 173 | IPR007112 | - | |
| Car03g01078 | 267 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 183 | 263 | IPR007117 | - | |
| Car03g01078 | 267 | Pfam | Expansin C-terminal domain | 174 | 252 | IPR007117 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car03g01078 | Car-Chr3:8772489 | Car04g00193 | Car-Chr4:1056885 | 3.62E-93 | dispersed | |
| Car03g01078 | Car-Chr3:8772489 | Car02g00576 | Car-Chr2:4394601 | 2.62E-94 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car03g01078 | - | - | csv:101204720 | 404.445 |