Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01082 ATGCCGATCCGTAACATCGCCGTTGGAAGGCCCGATGAGGCTACCAGTCCGGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACCTTGATTTTTGTTTTTGCCGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACTGACGGCGGCGCCGCCACTCCCGCCGGCCTCATCTCCGCCTCCATCGCTCATGCCTTTGCCCTGTTTGTCGCCGTCTCCGTCGGCGCTAACATCTCTGGCGGCCACGTCAACCCCGCTGTTACCTTCGGCGCCTTCGTCGGCGGTAACATCACCCTCCTACGTGGCATCATCTACTGGATTGCCCAGCTCCTCGGATCCGTCGTTGCCTGCTTGCTCCTTAAGTTCGTAACTGGCTTGCCCACCGGAAGCTTCGCTCTATCAGCTGGAGTGGGTGAACTAAACGCCTTCGTTTTCGAGATCGTGATGACATTCGGATTGGTGTACACAGTGTACGCGACCGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACAATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCTAACATCTTAGCCGGTGGAGCATTCACCGGAGCCTCGATGAACCCAGCGGTGGCATTTGGACCATCCGTGGTGAGCTGGTCATGGGACAACCACTGGGTCTACTGGGCTGGACCTCTGATCGGAGGTGGTCTTGCTGGGCTCATCTACGAGTTCATCTTCATCTCCAACTCCCACGAGCAACTCCCAACCACCGACTACTAA 753 56.84 MPIRNIAVGRPDEATSPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTDGGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGELNAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWDNHWVYWAGPLIGGGLAGLIYEFIFISNSHEQLPTTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8799843 8801419 + Carg10441-RA Car03g01082 145134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01082 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Car03g01082 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01082 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01082 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01082 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01082 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01082 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01082 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01082 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Car03g01082 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car03g01082 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Car03g01082 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Car03g01082 250 SUPERFAMILY Aquaporin-like 13 245 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car03g01082 Car14g00213 CCT
Car03g01082 Car07g00878 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01082 Car-Chr3:8799843 Car13g00787 Car-Chr13:8691917 6.67E-105 dispersed
Car02g01297 Car-Chr2:8646989 Car03g01082 Car-Chr3:8799843 1.73E-102 transposed
Car08g00606 Car-Chr8:3926839 Car03g01082 Car-Chr3:8799843 2.43E-99 transposed
Car12g00240 Car-Chr12:1610548 Car03g01082 Car-Chr3:8799843 1.01E-80 transposed
Car15g01239 Car-Chr15:9620866 Car03g01082 Car-Chr3:8799843 1.36E-61 transposed
Car14g00213 Car-Chr14:1009026 Car03g01082 Car-Chr3:8799843 2.08E-127 wgd
Car03g01082 Car-Chr3:8799843 Car07g00878 Car-Chr7:4717731 1.47E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01082 K09873 - csv:101204225 469.159