Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01085 ATGTTGACCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCTGCTGGCCGCTAGGTGCCGCCGCCGCCGCTCTCAACCTCACTCTACCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGTTTAATGCTAAGTTCCTTGAAAACCCTAAATTATGGAAGGAAATTGTTACCTGTTGCAGGAAAGTGAATGCTTCTGTAACGAGAAGGCAATTGCTCCAAAGCTTAGAGAAAGACGAATCTTCTTCTTGTTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAACTGGCCAAACAACCGCCAGCGTCTCGCCGATTGCGCCATAGGCTTCGGCCAGTACGCACTCGGCGGCAAGAACGGCGAGTTCTACATCGTCACAGACGATTCCGACGACGATGCAGTCAATCCAAAGCCCGGAACGTTACGATACGCCGTGATACAGCCTCAACCTCTCTGGATCGTCTTCCCGGCCAACATGCTCATTAAACTCAAACAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCACATCGTCGGCGGTGGCTGCATTACATTGCAGTACATAAGCAACGTCATCATCCACAACATCCACATCCACCATTGTTATCCATCAGGTAACACCATGGTCCGATCGAGTCCGACGCATTACGGATACCGCACGAAATCGGACGGCGACGGGATATCCATCTTCGGATCGAAGGACATATGGATTGACCATTGCTCACTCTCGCATTGCAAAGATGGGCTGATTGATGCGGTGATGGGCTCCACCGGAATCACAATTTCAAACAATTATTTCTCACATCACGATGAGGTTATGCTTTTGGGTCACAGCGATAGCTACTTGCCGGATTCCGGAATGCAGGTAACAATAGCGTTCAACCACTTCGGCGAGAAGCTAGTTCAAAGGATGCCGCGATGCCGGCGAGGGTACATTCACGTCGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGGAGCCCCACCATCAACAGCCAAGGCAACCGCTACACCGCCCCATACGACCGCAACGCCAAGGAGGTGACCAAGCGGGTTGAAACATCGGAGTCCGAGTGGCGGGGTTGGAACTGGCGCTCCGACGGCGACATCCTCGTTAACGGCGCCTTCTTCGTTACCTCTGGCCAAGGCCTCGAAGTCAAGTACGAGAAGGCCTACAGCGTCGAGCCCAAATCAGTCGCCCTGATCGACCAGCTCACTTGGCACGCTGGCCCGCTTGGCGTCGGCGGCAGGGATAACAATTTGGGGATGTGGACCACTGGCCCCAATGGAGGTGGAGGCTTTGTCATTGGGTCTGGTCCGGATTACACTGACGACATGTCCGAAAGCTTGTCTCGGATTGGGTCTTCTTATTTTGTCATGGTATTGTCTGTTTTGTTGTGTTCTTTTTGCGCATTGGCACTCGCATTTGTGCAATGA 1503 53.23 MLTTTCIVLLALLLPSCWPLGAAAAALNLTLPGQHPSPELVAQEVHRFNAKFLENPKLWKEIVTCCRKVNASVTRRQLLQSLEKDESSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGSPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSDGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSVALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGGFVIGSGPDYTDDMSESLSRIGSSYFVMVLSVLLCSFCALALAFVQ 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8811951 8814594 - Carg10438-RA Car03g01085 145137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01085 500 Pfam Pectate lyase 174 357 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g01085 Car-Chr3:8811951 Car15g00460 Car-Chr15:2447824 0 dispersed
Car07g00884 Car-Chr7:4739540 Car03g01085 Car-Chr3:8811951 3.01E-113 transposed
Car03g01085 Car-Chr3:8811951 Car07g00883 Car-Chr7:4738589 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01085 K01728 - csv:101203012 861.292